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Query: [G] COG0120 Ribose 5-phosphate isomerase, from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTERNTSTDSPEKRAAGIAAAGLVSSGMLVGLGTGSTVAYTIKELGRRVREEGLDILGVVTSYQSEMLAIEAGIRLTTLAQHPELDLAIDGADQIDSELRAIKGGGAAHTREKIVSVSARRFVVVADESKTSKQLDKLVPVEVLPFAKEPVVKKIRELGGKPQLRSAVKKDGPVITDNGNFVLDVEFGVIKDPEALALQLSSIPGVVEHGIFCNVSELYIGNKDGAIKIITRQKLast
1 -83.600sp|P49247|RPIA_HUMAN Ribose-5-phosphate isomerase OS=Homo sapiens GN=RPIA PE=1 SV=3  ali follow..  39  71.APSTMSKAEEAKKLAGRAAVEHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLVCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGKGIPIEVIPMAYVPVSRAVSQKFGVVELRMAVNKAGPVVTDNGNFILDWKFDRVHKWSEVNTAIKMIPGVVDTGLFINMAERVYFGMQDGSVNMREKP 309
2 -8.210sp|Q9H1A3|METL9_HUMAN(removed signalp:1-18) Methyltransferase-like protein 9 OS=Homo sapiens GN=METTL9 PE=2 SV=1  ali follow..  8  103LGRGSMFVFSPDQFQRLLKINPDWKTHRLLDLGAGD-------EVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYD-LTLLKDIRSVLEPTRGRVILA--LVLPFHPYVENVGGKWEKPSEILEIKGQNWEEQVNSLPEVFRKAGFVIE....................................................................... 270
3 -7.610sp|P49770|EI2BB_HUMAN Translation initiation factor eIF-2B subunit beta OS=Homo sapiens GN=EIF2B2 PE=1 SV=3  ali follow..  17  141.....LVELEGTMENIAAQALEHIHSNEVI-IGFSRTVEAFLKEAARKRKFHVIVAECAPQGHEMAVNLSKAGIETTVMTDMSRVNKVIIGTKTILANGALRAVTGTHT-----LALAAKHLIVCAPMFKLSPQFPNE-PEEVLPFTEGDILEKVSVHCPVFDYVPPE---TLFISNIG....................................................... 329
4 -7.370sp|Q14232|EI2BA_HUMAN Translation initiation factor eIF-2B subunit alpha OS=Homo sapiens GN=EIF2B1 PE=1 SV=1  ali follow..  13  101.....LRRISLSRNKIADLCHTFIKDGATI--AYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALNVPVTVVLDMEKADLVIVGAEGVVENGGIINKIGTNQMA--CAKAQNKPFYVVAESFKFVRLF................................................................................................... 239
5 -7.170sp|P50135|HNMT_HUMAN Histamine N-methyltransferase OS=Homo sapiens GN=HNMT PE=1 SV=1  ali follow..  9  59.............................IGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVQKWDFIHDIPATLKFFHSLLGTNAKMLIGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDG------------------NENGDLLWDFLTETCNFNATAPPDLRAGKDLQEPEFSAKKEGKVLFNNTLSFIVIEA.. 292
6 -6.970sp|Q8TDD1|DDX54_HUMAN ATP-dependent RNA helicase DDX54 OS=Homo sapiens GN=DDX54 PE=1 SV=2  ali   12  131.......................LDGKDVVAMGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTAL----------------GGDRMEDQFAALHENPDIIIATPGRLVHVAVEM--------------------------SLKLQSVEYVVFDEADRLFEMGFAE-----QLQEIIARLPGGHQTVLFSATLPKLL.............. 285
7 -6.930sp|P52788|SPSY_HUMAN Spermine synthase OS=Homo sapiens GN=SMS PE=1 SV=2  ali follow..  13  126...............................TADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTM----------------VEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVL---KQDGKYFTQGN. 317
8 -6.880sp|Q9NVP1|DDX18_HUMAN ATP-dependent RNA helicase DDX18 OS=Homo sapiens GN=DDX18 PE=1 SV=2  ali   15  50.........TNMTEIQHKSIRPLLEGRDLLATGSGKTLAFLIPAVELIVKLRFMPRNGTGV-SPTRELAMQTFGVLKELMTHHVHTYGL----------------GGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMY-------------------------KNLQCLVIDEADRILDVGFEE-----ELKQIIKLLPTRRQTMLFSATQTRKV.............. 221
9 -6.770sp|Q68D06|SLN13_HUMAN Schlafen family member 13 OS=Homo sapiens GN=SLFN13 PE=2 SV=1  ali   12  119LGCEVLNLLTAQQYEIFSRSLRKNRELFVHG-GSGKTIMAMMEKIRNVFHCEAHRILYVCENQPLRNFISDR--TFLREKFEHIQHIVIDEAQNFRTEDGDWYRKAKTITQRE--KDCPGVLWIFLDYFQTSHLGHSGLPPLSAQYPREELTRVVRN............................................................................. 283
10 -6.730sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens GN=DDX27 PE=1 SV=2  ali   14  103.......................LLGKDICACGTGKTAAFALPVLERLIKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCL----------------GGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHL-------------------------SSIEVLILDEADRMLDEYFEE-----QMKEIIRMCSHHRQTMLFSATMTDEV.............. 259
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;