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Query: [L] COG1039 Ribonuclease HIII, from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNIVLKLETKERQQLAEKYKSYEQVSKNPYITFFAKVGKTSISVYTSGKVVFQGNEAEKLASDFGHIAQVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGNLSDKIAAQIIKSQGVDALNQLAKLHFANTQKAIKIAQLLast
1 -60.600sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2  ali follow..  18  3..................................................LSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTVGWALDVLSPNLISTLGRVKYNLNSLSHDTATGLIQYALDQ-GVNVTQVFVDTVGMPETYQARLQQS--FPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEDLDTDYGSGYPNDPKTKAWLKEHPVFGFPQFVRFSWRTAQTILEKEAE 250
2 -6.070sp|Q9BSD7|CA057_HUMAN Nucleoside-triphosphatase C1orf57 OS=Homo sapiens GN=C1orf57 PE=1 SV=1  ali follow..  11  7.............................................................................LTGPPGVGKTTLIHKAS-----------EVLKSSGVPVDGFYTEEVRQG------RRIGFDVVTLSGTRGPLSRVGLEPPPTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT----------STPGTIILGTIPVPKGKPLALVEEIRNRKDVKV-----FNVTKENRNHLLPDIVTCVQSSRK............... 190
3 -5.980sp|Q9BZL6|KPCD2_HUMAN Serine/threonine-protein kinase D2 OS=Homo sapiens GN=PRKD2 PE=1 SV=2  ali   17  255.................................................................................EVLGSGQ-FG-VVYGGKHRKTGRDVAVKVI---DKLRFPTKQESQLRNEVA................................................................................................................................................................ 300
4 -5.910sp|Q9H330|CI005_HUMAN Transmembrane protein C9orf5 OS=Homo sapiens GN=C9orf5 PE=1 SV=2  ali   60...........................................................................AVAGGAYYLGEGAIIGPILLCILVVASNIYSAMLVSPTNSVPTPNQTPWPAQPQRTFRDISERSEIFSKVDVVSSAVIFLRKFKFDSEFSSAV............................................................................................................................ 153
5 -5.840sp|O43166|SI1L1_HUMAN Signal-induced proliferation-associated 1-like protein 1 OS=Homo sapiens GN=SIPA1L1 PE=1 SV=4  ali   12  192.................................................................YRKFFYQKEHWNYFGADEN-----LGPVAVS-----------IRREKPDEMKENGSPYNYRIIFRTSELMTLRGSVLEDAIPSTAKHSTARGLPLK-----EVLEHVVPELNVQCLRLAFNTPKVTEQL.................................................................................................. 299
6 -5.540sp|Q8WXG6|MADD_HUMAN MAP kinase-activating death domain protein OS=Homo sapiens GN=MADD PE=1 SV=2  ali   14  145....................................................................................................PQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIWSSGSRHMKKQTFV-------VHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERW-------------------------------YEKLINMTYCPKTKVL..... 295
7 -5.500sp|O94983|CMTA2_HUMAN Calmodulin-binding transcription activator 2 OS=Homo sapiens GN=CAMTA2 PE=1 SV=3  ali   1...............................................................................ALEDCGK---CSPIFCSI----------------SDRREWLKWSREELLGQLKPMFH--------------GIKWSCGNGTEEFSVEHLVQQILDTHPTKPAPRTHACLCSGGLGSGSLTHKCSSTKHRIISPKVEPRALTLTSIPH.................................................................. 116
8 -5.460sp|Q9Y6B6|SAR1B_HUMAN GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1  ali follow..  11  30.............................................................................FLGLDNAGKTTLLHMLKDDRLGQHVPTLHTSEELTIAGMT--GHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI-----SEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID............................................... 198
9 -5.450sp|Q8N7U6|EFHB_HUMAN EF-hand domain-containing family member B OS=Homo sapiens GN=EFHB PE=2 SV=4  ali   12  145.................................................................................EEGSAYSLLYPTIFA-------------RKGVFERDFFKTRSKEEIAEILCNI-----VKLSDEEFENVWNLASKKHEVCVENIRNVLDELRHADRIKCKTLM............................................................................................................ 233
10 -5.390sp|Q9NR31|SAR1A_HUMAN GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1  ali follow..  12  30.............................................................................FLGLDNAGKTTLLHMLKDDRLGQHVPTLHTSEELTIAGMT--GHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAI-----SEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID............................................... 198

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.