current user: public
If you have questions about the server, please let us know.

Query: [M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4), from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480
# Score Template Links and tools%idFirst MHFSRIVSGLACSIILNISVSNANAAQVENYTQYLPDGANLALMVQKIGASTPAIDYHAQQMALPASTQKVLTALAALLQLGPDFRFNTTLESHGTITDGVLRGNLIARFGGDPTLTRQQLRNMVATLRKAGVKQIAGDVVIDTSVFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYSAPNPGDTAFIRVASYYPVQMFSEVRTLAKGSPDAQYCELDVVPGELNRFTLTGCLTQRSEPLPLAFAVQNGASYAGAILKDELKKADIQIDGNLRRQTIPSPAGNVLAQTQSAPLHDLLKIMLKKSDNMIADTVFRTIGHQRFGVPGTWRSGADAVRQILRQKAGVDLGNSIVVDGSGLSRHNLISPATMMQVLQYIAQNDQELNFISMLPLAGYDGTLRYRGGLHEAGVNGKVSAKTGALQGVYNLAGFITTASGQRMAFVQFLSGYAVPPEDQKNRRAPLVRFESRLYKDIYQNNLast
1 -6.010sp|P83111|LACTB_HUMAN Serine beta-lactamase-like protein LACTB, mitochondrial OS=Homo sapiens GN=LACTB PE=1 SV=2  ali follow..  7  100...............CSRCFARAIESSRDLLHRIKDEVGAPGIVVGVSVDGKEVWSEKPETVMRIASISKSLTMVALA-----------KLWEAGKLD---LDIPVYV-----PEFPEKEYEGEKVSVTTR-------LLISHLSGIRHYEKDIKKVKEEKAYKALKMMKENVAFEQEKEGKSNEKND--EAKCRNSKPGKKKNDFEQGELYLREKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVE-------------RASGCKYLDYMQKIFHDLDMLTTVQEENEPVIYNRARFYVYNKKKRLVNTPYVDNSYKWAG--GGFLSTVGDLLKFGNA----------MLYGYQVGLFKNSNENLLPGYLKPETMVMMWTPVPNT----AMAWGVVERKQTYGSCRKQHYASHTGGAVGASSVL-INNKVPPRGIIVSIICNMQSVGLNSTALKIALEF.............. 541
2 -5.930sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2  ali   13  15...................................................................................................................................................................................................................................................................................GCGLARPGGGPQAFGIRLSTMSPRYLQSNSSSHTRPFSAIAELL-----------DNAVDPDVSARTVFIDVEEVKNKSCLTFTDGCGMT------PHKLHRMLSFGFTDKVIKKSQCPIGVFGN-G------------------FKSGSMRLGKDAL--VFTKNGGTLTVGLLSQTYLECVQA....................... 161
3 -5.910sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN PE=1 SV=2  ali   18  113.........................................................................................................................................................................................................................................................................................SKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMLKELEQEAHFVAGE--TSNNQLREILFGKLKLHLSQRNSLPRTGLQKYPSTSEAVLNALLEYRQVHKIKSTFVDGLLACMKKGSISSTWN-QTGTVTGRLSAKHPNIQGISKHP--IQITTPKNF...................................... 295
4 -5.810sp|Q8TC59|PIWL2_HUMAN Piwi-like protein 2 OS=Homo sapiens GN=PIWIL2 PE=2 SV=1  ali   7  1.....................................................................................................................................................................................................................................................................................................SRGMRSVVGFVASINLTLTKWYSRVVFQMPHQEIVDSLKLC---VGSLKKFYEVNHCLPEKIVVYRDGVSDGQLKTVANYEIPQLQKCFEA---FENYQPKMVVFVVQKKISTNLYLAAPQNFVTPTPGT-TITSCEWVDFYLLAHHVIPTHYVCVLNTANLSPDHMQRLTFKLCHMYWNWPGTI.... 188
5 -5.800sp|O43924|PDE6D_HUMAN Retinal rod rhodopsin-sensitive cGMP 3`,5`-cyclic phosphodiesterase subunit delta OS=Homo sapiens GN=PDE6D PE=1 SV=1  ali follow..  13  20..........................................MNLRDAETGKILWQGTEDEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLL.......................................................................................................................................................................................................................................................................................................................................... 139
6 -5.750sp|Q7Z3Z3|PIWL3_HUMAN Piwi-like protein 3 OS=Homo sapiens GN=PIWIL3 PE=2 SV=2  ali   10  21.....................................................................................................................................................................................................................................................................TIVTKIAQQMNCKMGGALWKVETDVQRTMFVIVNRQKSIAGFVASTNAELTKWYSQCVIQKTGEELVKELEIC---KAALDVWCKNESSMPHSVIVYRDGVGDGQLQALLDHEAKKMSTYLKT---ISPNNFTLAFIVVKKRINTRFFLKHGSNFQNPPPGT-ELTRNEWYDFFIVSQSVTPTHYNVIYDTIGLSPDTVQRLTYCLCHMYYNLPGII.... 247
7 -5.610sp|Q96J94|PIWL1_HUMAN Piwi-like protein 1 OS=Homo sapiens GN=PIWIL1 PE=1 SV=1  ali   10  2........................................................................................................................................................................................................................................................................TKIALQMNCKMGGELWRVDIPLKLVMIVMTAGRRSIAGFVASINEGMTRWFSRCIFQDRGQELVDGLKVC---QAALRAWNSCNEYMPSRIIVYRDGVGDGQLKTLVNYEVPQFLDCL--KSIGRGYNPRLTVIVVKKRVNTRFFAQSGGRLQNPLPGT-EVTRPEWYDFFIVSQAVSPTHYNVIYDNSGLKPDHIQRLTYKLCHIYYNWPGVI.... 226
8 -5.540sp|Q9BY32|ITPA_HUMAN Inosine triphosphate pyrophosphatase OS=Homo sapiens GN=ITPA PE=1 SV=2  ali follow..  13  11..................................................................................................................................................................................................................................................................................................VFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEAVRQVLVEDTCLCFNALGGLPGPYIKWFEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVR----LFRGRTSGRIVAPRGC--------GWCFQPDGYEQTYAEMPKAEKNAVSHRFRALLELQEYFGSL........ 192
9 -5.300sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3  ali   13  15........................................................................................................................................................................................................................................................................................................CPKFLHTNSTSHTWPFSAVAELI-----------DNAYDPDVNAKQIWIDKTVINDHICLTFTDGNGMT------SDKLHKMLSFGFSDKVTMNGHVPVGLYGN-G------------------FKSGSMRLGKDAI--VFTKNGESMSVGLL................................. 130
10 -5.160sp|Q5QHF1|CT199_HUMAN Putative uncharacterized protein C20orf199 OS=Homo sapiens GN=C20orf199 PE=5 SV=2  ali follow..  20  9...................................................................................................................................................................................................................................................................................................................................GLSRPQRKGNPSSGLVRVKRDMARKRTSPGGPACRGKGAGLDAAWTTTRAPRAVLLETTFPR----------------ATRAERAGKRAFRVQ---------CAGAKAIFGYIREVQEAIRSFASAV................................ 110
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.