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Query: [K] COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB, from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEREKITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGAKNIEDVKRTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVGLILast
1 -64.400sp|P62380|TBPL1_HUMAN TATA box-binding protein-like protein 1 OS=Homo sapiens GN=TBPL1 PE=1 SV=1  ali follow..  26  5SDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRD-VGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQV-IFTDFKVVNVLAVCNMPFEIRLPEFTKNN-RPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNV-KAVATAVEQIYPFVFES... 181
2 -53.200sp|Q6SJ96|TBPL2_HUMAN TATA box-binding protein-like protein 2 OS=Homo sapiens GN=TBPL2 PE=2 SV=1  ali follow..  38  195.CCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPA-RFLDFKIQNMVGSCDVRFPIRLEGLVLTHQ-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGF... 372
3 -51.100sp|P20226|TBP_HUMAN TATA-box-binding protein OS=Homo sapiens GN=TBP PE=1 SV=2  ali follow..  37  158.SSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHQ-QFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGF... 335
4 -10.200sp|Q96Q05|TPPC9_HUMAN Trafficking protein particle complex subunit 9 OS=Homo sapiens GN=TRAPPC9 PE=1 SV=2  ali   15  1....VQLMVYN------MPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLV-TTGTITVNG------YHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPL.......................... 146
5 -8.910sp|Q96Q05|TPPC9_HUMAN Trafficking protein particle complex subunit 9 OS=Homo sapiens GN=TRAPPC9 PE=1 SV=2  ali   15  150...EVQLMVYN------MPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTL--TTGTITVNG------YHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPL.......................... 296
6 -7.750sp|A6NFQ2|F115C_HUMAN Protein FAM115C OS=Homo sapiens GN=FAM115C PE=2 SV=2  ali   9  1MATIAAAAFEALMDGVT---CWDVPRGPIPSELLLIGEAAFPVMVNDKGQVLIAASSYGRGRLVVVSHEGYLSHTGLAPFLLNAVSPGAPVGVHPSLAPLVNILQDAGLEAQVKPEPGEPLGVYCINAYNDTLTATLI-----------VKHGGGLLIGGSQHGPDKVLSRFPGNKVTSVAGV. 182
7 -7.480sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3  ali   10  10.....TCTASNLVGQTYSSVLVVVREFKKRLQDLEVREKESATFLCEVPQPSTEAAWFKEETRLWASAKYGIEEEGTERRL--TVRNVSADDDAVYICETPEGSRTVA---ELAVQGNLLRKLPRKTAVRVGDTAMFCVELAVPVGPVHWLRNQEEVVAGGRVAISAEGTRHTLT......... 178
8 -7.480sp|P24557|THAS_HUMAN(removed signalp:1-34) Thromboxane-A synthase OS=Homo sapiens GN=TBXAS1 PE=1 SV=3  ali follow..  14  287.PMARPLTVDEIVGQAFIFLIAGYEIITNTLSFATYLLATNPDCQEKLLREVDVFKEKHMAPEFCSLEEGLPYLDMVIAETLRMYPPAFRFTREAQDCEVLGQRIPAGAVLEMAVGALHHEHWPSPETFNPERFT----RQQHRPFTYLPFGAGPRSCLGVR---GLLEVKLTLLHVLHKFRF. 468
9 -7.330sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2  ali   11  1..............SLTWRKQHQVDYILETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINEEGLRRCEENTKVFGRPISSWTCL---VDLEGLNMRHLWRPGANYPETLGRLLI-LRAPRVFPVLWTRRKFLIYAGNDYQGPGGLLDYI.......... 178
10 -7.030sp|P20941|PHOS_HUMAN Phosducin OS=Homo sapiens GN=PDC PE=2 SV=1  ali follow..  14  112............................................................GFVYLETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLP-----------TLLIYKGGELIFISVAEQFAEEFFAGDVESFLNEYGLL 227
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;