current user: public
If you have questions about the server, please let us know.

Query: [S] COG2855 Predicted membrane protein, from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .
# Score Template Links and tools%idFirst MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGFSALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGISGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAISPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAIFNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLIVGGGAINYVIQSVIALast
1 -15.100sp|Q86UD5|NHDC2_HUMAN Mitochondrial sodium/hydrogen exchanger NHA2 OS=Homo sapiens GN=NHEDC2 PE=1 SV=2  ali follow..  11  107.............SECLPGIILFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNIPVINDNVQIKHKW---SSSLRSIALSIIGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQWGFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFILAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQRDQDKLVCKRTFLVLGLSVLAVFSSVHFGFPGSG-----GLCTLVMAFLAG---MGWTSEKAEVEKIIAVAWDIFQPLLFGLIGAEVSIASLRPETVGLCVATVGIAVLIRILTTFLMVCFAGF.. 445
2 -14.400sp|Q4ZJI4|NHDC1_HUMAN Sodium/hydrogen exchanger-like domain-containing protein 1 OS=Homo sapiens GN=NHEDC1 PE=2 SV=2  ali follow..  12  101...................IFYSAIIGGKILQLIRI--PLVPPLPPLLGMLLAGFTIRNVPFINEHVHVPNTW---SSILRSIALTIIGLGLDPQALRHLKVVCFRLAVGPCLMEASAAAVFSHFIMKFPWQWAFLLGFVLGAVSPAVVVPYMMVLQENGYGVEEGIPTLLM-DILAITGFNTCLSIVFSSGGILNNAIAS-NVCISLLAGIVLGFFVRYFPSEDQKKLTLKRGFLVLTMCVSAVLGSQRIGLHGSG-----GLCTLVLSFIAG---TKWSQEKMKVQKIITTVWDIFQPLLFGLVGAEVSVSSLESNIVGISVATLSLALCVRILTTYLLMC...... 421
3 -10.200sp|A8MT54|NHCL2_HUMAN Putative protein NHEDC1-like 2 OS=Homo sapiens PE=5 SV=2  ali follow..  10  2..................................................LLAGFTIRNVPFINEHVHVPNAWSSILRS-IALNIILIGLGLDPQALRHLKVVCFRLAIGPCLMEASAAAVLSHFIMKFSWQWAILLGFVLGAVSPAVVVLYTMVLQENGYGVEEDIPTLLMAASLALTGFNTCLSIVFASIGNVCISLLAV---------IVLGLFVRYFPSEDQKKLTLKRGFLVLTTCVSAVLGSQHIGLHGSG-----GLCTLVLSFIAGTKWSQ-----MKVRKIITNVWDIFQPLLFGLVGAEVSVSLLESNIVGISVATLSLALCVRILTTYLLMC...... 293
4 -9.720sp|Q6UWJ1|TMCO3_HUMAN(removed signalp:1-22) Transmembrane and coiled-coil domain-containing protein 3 OS=Homo sapiens GN=TMCO3 PE=2 SV=1  ali   12  97..............HFIKDIVTIGMLSLPCGWL-----CTAIGLPTMFGYIICGVLLGPSGLNSIKSI-------QVETLGEFGVFFTGLEFSPEKLRKVWKISLQGPCYMTLLMIAFGLLWG-HLLRIKPTQSVFISTCLSLSSTPLVSRFLMGSARGDKEGDIDYSTV----LLGMLVTQDVQLGLFMAVMPTLIQ-------AGASASSSIVVEVLRILVLIGQILFSLAAVFL................................................................................................................ 300
5 -8.600sp|Q7RTP0|NIPA1_HUMAN Magnesium transporter NIPA1 OS=Homo sapiens GN=NIPA1 PE=1 SV=1  ali follow..  10  32..............................................LGVAVVSSLVNGVLQKKGIVRAKRRGTSYLTDIVWWAGTIAMAVG-QIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSP--SESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSFTVPSTKGIGLAAQDILH--VLLAVLGCSIIVQFRYINKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGI......................................... 305
6 -8.400sp|Q8IVB4|SL9A9_HUMAN Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC9A9 PE=1 SV=1  ali   11  13...................TGLFFLLSWSAFLSAEA-----AGLTGIVAVLFCGVTQAHYTYNNLSSDSKIRTKQLFEFMNFLAFCYMGLALFTFQNHIFNALFILGAFLAIFVARACNIYPLSFLLKIPWNFQHMMMFS-GLRGAIAFALAIRNTESQPKQMMFTTTLLLVFFTVWV........................................................................................................................................................................... 175
7 -8.240sp|Q6NVV3|NIPA3_HUMAN Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1  ali follow..  12  72..............................................LVLAVSSSFILKKKGLLQLASKGFTRAGQGGHSYLKVGLLSMGAG-EAANFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVMVIHAP--EEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELIEWKVLLAVLVLSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGI......................................... 351
8 -8.200sp|Q9H841|NPAL2_HUMAN NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1  ali follow..  14  51..............................................VLLAILGNLVISISLNIQKYSHLQLAQQEHPRPYFKSVLWWGGVLLETGNFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDLLGTTLAFAGTYLLVNFAP--NITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFYKRKGMKHMVILLTLVAILASLTVISVKAVSGMITFSVMDKIMFIIMIASCVFQVKFLNQATKLYNTTTVVPVNHIFFTISAIIAGIIFYQEFLGAPFLTVFIYLFGCFLSFLGV......................................... 323
9 -7.810sp|Q96T83|SL9A7_HUMAN(removed signalp:1-38) Sodium/hydrogen exchanger 7 OS=Homo sapiens GN=SLC9A7 PE=1 SV=1  ali   13  23...................TALFFLMSWSTFLLAEA-----CGFTGVVAVLFCGITQAHYTYNNLSVESRSRTKQLFEVLHFLAFSYMGLALFTFQKHVFSPIFIIGAFVAIFLGRAAHIYPLSFFLKIGWNFQHMMMFS-GLRGAMAFALAIRDTASYARQMMFTTTLLIVFFTVWI........................................................................................................................................................................... 185
10 -7.760sp|Q96EP9|NTCP4_HUMAN Sodium/bile acid cotransporter 4 OS=Homo sapiens GN=SLC10A4 PE=2 SV=2  ali follow..  12  112...............................................................................ALCITMLGLGCTVDVNHFGAH-PVGALLAALCQFGLLPLLAFLLALAFKLDEVAAV----AVLLCGCCPGGNLSNLMS--DGDMNLSIIMTISSTLLALVLMPLCLWIY-------------------------SWAWINTPIVQLLPLGTVTLTLCSTLIPIGLGVFIRYKYSRVADYIVKVSLWSLLVTLVVLFIMTGTMLGPELLASIPAAVYVIAIFMPLAGYASGYGLATLFHLPPN--TVCLETGSQNVQLCTAILKLAF.... 352
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.