current user: public

If you have questions about the server, please let us know.

Query: [H] COG2998 ABC-type tungstate transport system, permease component, from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .
# Score Template Links and tools%idFirst MEFTMKKTTFTLAAASLILVSYSASSADDARIRLATTTSTYDSGLLDYLLPKFEQDTGYKVDVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGFGVLPRKLMYNDFVVVGPESDPAKIADEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGPTLNMASEMQAYTLTDRGTWLAYNNKLALKILFEGDEQLFNPYQVIIVNPERYPTTQYHAAKVFSDWLVNPKGQQLINEFKVNGQQLFVANADKQLast
1 -6.930sp|P02788|TRFL_HUMAN(removed signalp:1-19) Lactotransferrin OS=Homo sapiens GN=LTF PE=1 SV=6  ali   1..........................GRRRSVQWCAVSQPEATK-CFQWQRNMRKVRGPPVSCIKRDS-QCIQAIAENRADAVTLDGGFKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGLRRTASASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVDEAERDEYELLCPDNTRKRVPSHAVVA------RSVNGKEDAIWNLLR--QAQEKFGKDKSPKFQLFGSPSGQK 296
2 -6.800sp|Q9NQZ3|DAZ1_HUMAN Deleted in azoospermia protein 1 OS=Homo sapiens GN=DAZ1 PE=1 SV=2  ali   10  34.......................EGKIVPNTVFV---GGIDARMDETEIGSCFGRYGSVEVKIITNRTGV-----SKGYGFVSFVNDVDVQK-------IVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGG-GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSIHFHGKKLKLGPAIRK 281
3 -6.720sp|Q13387|JIP2_HUMAN C-Jun-amino-terminal kinase-interacting protein 2 OS=Homo sapiens GN=MAPK8IP2 PE=2 SV=2  ali   13  261....................................................................................................................................................................................................................................GDTSPDSPDLTFSKKFLNFVNSTSRSSSTESFG-----LFS...... 297
4 -6.520sp|P02787|TRFE_HUMAN(removed signalp:1-19) Serotransferrin OS=Homo sapiens GN=TF PE=1 SV=3  ali   2.........................PDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASLDCIRAIAANEADAVTLDAGLNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIG-----LLYCDLPEPRKPLEKAVANFFSGSFGYSGAFKCLKDGAGDVAFVKHSTIFEADRDQYELLCLDNTRKQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSPHGKDLLFKDSAH. 300
5 -6.460sp|P08582|TRFM_HUMAN(removed signalp:1-19) Melanotransferrin OS=Homo sapiens GN=MFI2 PE=1 SV=1  ali   22......EAWLGHEYLHAMKGLLCDPNRLPPYLRWCVLSTPEIQKCGDMAVAFRRQRLKPEIQCVSAKSQHCMERIQAEQVDAVTLSGEDGLVPAAGEHYAPEDSSNSYYVVAVVRRDSSHA---------FTLDELRGKRSCHAGFGSPAGWDVPVGALIQRGFIRPKDCDVLTAVSEFFNASCVPVNNPKNYPSSLCALCVGDEQGRNKCVGNSQERYYGYRGAFRCLVENAGDVAFVRHTTVFDNTNGHNSEPWAAELRSEDYELLCPNGARA 290
6 -6.340sp|Q9NQZ3|DAZ1_HUMAN Deleted in azoospermia protein 1 OS=Homo sapiens GN=DAZ1 PE=1 SV=2  ali   10  49.......................EGKIVPNTVFV---GGIDARMDETEIGSCFGRYGSVEVKIITNRTGV-----SKGYGFVSFVNDVDVQK-------IVGSQIHFHGKKLKLGPAIRKQKLCARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGG-GSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVGSQHFHGKKLKLGPAIRK 296
7 -5.790sp|P24666|PPAC_HUMAN Low molecular weight phosphotyrosine protein phosphatase OS=Homo sapiens GN=ACP1 PE=1 SV=3  ali follow..  2........................AEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKA............................................................................................................................................ 112
8 -5.780sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1  ali   3......KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT----NLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAQEGHNLGLLHGDMDQSERNKVISDFINYDVARDIDTHTHRIGRTGR.......... 291
9 -5.740sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3  ali   8..............................................KNVMEFLAPLKPVAIRIVRNAHGN-----KTGYIFVDFSNEEEVKQALKCNR------EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGP-----------------------------------------------LSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDFQGRMLHVLPSTIK 181
10 -5.680sp|Q96JP9|CDHR1_HUMAN(removed signalp:1-19) Cadherin-related family member 1 OS=Homo sapiens GN=CDHR1 PE=1 SV=2  ali   19  192...............VPTVSGSLTPQPTQPPPKPKTMGSPVQSTLISELKQKFEKKS.......................................................................................................................................................................................................................... 233

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.