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Query: [K] COG3888 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLRDVLLRELKRARGLGIDQFQIEEMMGFSKSTVSEALKDLEEKGIIKRRTIGGKIKHVWLAEYYPYYDEKLLRIGCLRSTEYVKFVSVAKNYSESKGIDLIVRFYDDAISLMNDLSQGLLEFALAPIFTEIIYSISNRNSIILGAVASGGSGVYKNVNCNCGKILTSESSSMMILAREFAKTRKISEIAIFKDPRRAIKDYESFKAEYIVIWEPYASKIMGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLYKRSRFTAREDVIDIFAKSTSVSPKTAKASLENYIWDIKFYRSDLKKYLEFIGYPPIEEIIEKIYEEVLast
1 -12.800sp|P02788|TRFL_HUMAN(removed signalp:1-19) Lactotransferrin OS=Homo sapiens GN=LTF PE=1 SV=6  ali   8  1....................................................................GRRRSVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAVAVVKKGGSFQLNELQGLKSCHTRRTAGWNVPIGTLRPFLNSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDE-HLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSG............................................... 294
2 -12.300sp|P02787|TRFE_HUMAN(removed signalp:1-19) Serotransferrin OS=Homo sapiens GN=TF PE=1 SV=3  ali   8  2.....................................................................PDKTVRWCAVSEHEATKFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVVAVVKKDSGFQMNQLRGKKSCHTGRSAGWNIPIGLLYCDLPSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQ-HLAQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKD............................................. 292
3 -10.700sp|P08582|TRFM_HUMAN(removed signalp:1-19) Melanotransferrin OS=Homo sapiens GN=MFI2 PE=1 SV=1  ali   8  1..............QKDLLFKDSTSELVPIATQTYEAWLGH-------------EYLHAMKGLLCDPNRLPPYLRWCVLSTPEIQKCGDMAVAFRRQRKPEIQCVSAKSPQHCMERIQAEQVDAVTLSGEDIYTAGKKYGLVPAAGVVRRDSSHAFTLDELRGKRSCHAGSPAGWDVPVGALIQRGFIRPKDCDVLTAVSEFFNA.......................................................................................................................... 197
4 -10.000sp|P55265|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4  ali   18  138.DQEQRILKFLEELGGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE.................................................................................................................................................................................................................................................................................... 188
5 -8.510sp|Q9H171|ZBP1_HUMAN Z-DNA-binding protein 1 OS=Homo sapiens GN=ZBP1 PE=1 SV=2  ali follow..  11  13.HLEQRILQVLTEAG-SPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLQQHAATIPETPGPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKS.......................................................................................................................................................................................................................... 149
6 -8.420sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   18  66RDMLTQTYDLIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVK...................................................................................................................................................................................................................................................................................... 114
7 -8.330sp|P08582|TRFM_HUMAN(removed signalp:1-19) Melanotransferrin OS=Homo sapiens GN=MFI2 PE=1 SV=1  ali   6  1......................................................................GMEVRWCATSDPEQHKCGNMSEAFREAGQPSLLCVRGTSADHCVQLIAAQEADAITLDGGAIYEAGKEHGLKPVVGVAVVRRSSHVTIDTLKGVKSCHTNRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGS......................................................................................................................... 152
8 -7.840sp|P02787|TRFE_HUMAN(removed signalp:1-19) Serotransferrin OS=Homo sapiens GN=TF PE=1 SV=3  ali   9  206...........................................................................................DEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGKCGLVPVLAEAVVKKSASDLTWDNLKGKKS................................................................................................................................................................. 299
9 -7.790sp|P55265|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4  ali   16  148.EIKEKICDYLFNVSD--SSALNLAKNIGLTKARINAVLIDMERQGDVYR..................................................................................................................................................................................................................................................................................... 195
10 -7.650sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   17  216RDMLTQTYDLIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVKGFM................................................................................................................................................................................................................................................................................... 267
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24