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Query: [J] KOG3445 Mitochondrial/chloroplast ribosomal protein 36a, from VFDB

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNSHLFLKSGFPRAPLQNGLGRYVCQLQRITLKFCKNNGSSRGMRDFIENHLLDFAKENPGIVVYVKPRRHRTPVLVGEYLNGEREWMSCRNSTQEEISKWIDLLKTQNGSSSSLRLRKMWHTEVPSIQGPWTPFLLRSPDAQGQAYPSAEASKPLDTPQTATEKLIELFRQQQLEAGEEAHDVLNKKRAELast
1 -64.000sp|P82663|RT25_HUMAN 28S ribosomal protein S25, mitochondrial OS=Homo sapiens GN=MRPS25 PE=1 SV=1  ali follow..  14  1MPMKGR-FPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLGQVPCPSLVPLPKEMRGKYKAALKADAQD.......................... 173
2 -62.200sp|Q8N983|RM43_HUMAN 39S ribosomal protein L43, mitochondrial OS=Homo sapiens GN=MRPL43 PE=1 SV=1  ali follow..  35  1..MTARGTPSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQSGLD-VIRIRKPFHTDNPSIQGQWHPFTNKPTTFRGLRPPAPAQDTGLRLSAVAPQILLPGWPDPPDLPTVD........... 183
3 -42.600sp|O43678|NDUA2_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3  ali follow..  19  1............MAAAAASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVLSGKA................................................................................. 99
4 -23.300sp|Q96EL3|RM53_HUMAN 39S ribosomal protein L53, mitochondrial OS=Homo sapiens GN=MRPL53 PE=1 SV=1  ali follow..  13  10........................LRPVKQVRVQFCPFEKNVESTRTFLQTSSEKVRSTNLNCSVIADRHDGSEPCVDVLFGDGHRLIMRGAHLTALEMLTAFASHIRARDAAGSGD........................................................................... 104
5 -8.450sp|P17405|ASM_HUMAN Sphingomyelin phosphodiesterase OS=Homo sapiens GN=SMPD1 PE=1 SV=4  ali   14  9..........................HVDEFEVFYDEETLSRPLAVAFLAPSATTYIGLNPGYRVYQANIPGAIPHWQLLY--RARETYGLPNTLPTAWHNLVYRMRGDM.................................................................................. 114
6 -8.260sp|Q8WWX9|SELM_HUMAN(removed signalp:1-23) Selenoprotein M OS=Homo sapiens GN=SELM PE=1 SV=3  ali follow..  20  13..........................GLTRARVETCGGXQLNREVKAFVTQDIPFYHN------LVMKHLPGADPELVLLGRRYEEERIPLSEMTREEINALVQE....................................................................................... 88
7 -6.680sp|O60613|SEP15_HUMAN(removed signalp:1-28) 15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3  ali follow..  17  73............................................VQAFVRSDKPKLFRG-----LQIKYVRGSDPVLKLLDDNGNIEELSILKWNTDSVEEFLSE....................................................................................... 129
8 -6.460sp|Q5GFL6|VWA2_HUMAN(removed signalp:1-23) von Willebrand factor A domain-containing protein 2 OS=Homo sapiens GN=VWA2 PE=1 SV=1  ali   11  167............................CRVDLLFLLDSSAGTTAKVFVKRFVRAVLSEDSRARVGV-----------ATYSRELLVAVPVGEQDVPDLVWSLDGIPFRGGPTLT---------------------------SALRQAAERGFGSATRTGQDRPRRVVVLLTESHSEDEVAGPARHARARE. 299
9 -6.260sp|P46782|RS5_HUMAN 40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4  ali follow..  13  68.......................IVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHGENP-LQVLVNAIINSGPREDSTCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR.............................................................. 204
10 -6.140sp|Q14207|NPAT_HUMAN Protein NPAT OS=Homo sapiens GN=NPAT PE=1 SV=3  ali   7  6..........................DVARLVLGYLQQENLISTCQTFIL--------ESSDLK-----------EYAEHCTDEGFIPACLLSLFGKNLTTILNEYVA.................................................................................... 68
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;