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Query: [J] COG0009 Putative translation factor (SUA5), from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTKRWFVDVTDELSTNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIADISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALSPRVTAGLETVAIRMPDHPLALALIRESGLPIAAPSANLSGKPSPTKAEHVAHDLDGRIAGIVDGGPTGIGVESTVLSCADDIPVLLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGSPERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGRVIRLast
1 -3.300PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  14  7.KIQFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCFG------KFAIVKKVYEVNDGFNIGS-LVMYFPFSILYFVGFFFDLILFNLIE-FWSGPVGYNEYDENGKYVKAYEENGEKLLLSYSDFGKRLDI--------------QFAKEGNSQNLIVFRAEPGKFFVEKDGKLEEI................................................................................................................................................................... 177
2 -3.240PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  12  110.................................................................................................WPVQIKLAPVNAPYFDGAKLLIAADCTAYAYAS--FHEKFIKGHVTLIGCPKLDSVDYSEKLTEIIRRNDIQSVTIVRME--PCCGGLEMAA-FIPWQVATISIDGRI............................................................................................................................................. 222
3 -3.070PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  23  63.......................................EILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAI--------------------GSLAIILA---DAMLGELTPAMAAAIAASPARKFL--------LPINRSGVEVIG-VTPEPLPHLIEALVNRVKFFYQEGGDK.................................................................................................................................................................... 174
4 -2.550PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  13  205................................ISIFALTITFAYNSTFLNLAQIVRINTIRPNPNPNPNEIFNFDLNNLP-------ENGLLTVEAIW------FLQSKMELTDTATV---NTAYVNINKNSVKHNNFAVNYLKSEENNWYLTGRDFPLLGLFVEKFFKDDVEVVVNNSTKNIFSSVGISSLSTNNPKLI.................................................................................................................................................. 371
5 -2.310HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  14  1..............................................................................................................................................MAVSAPPILKTLKTKDMIAKTILQQIGGKRFTAMTGSRDFIDMGNGL............................................................................................................................................................. 47
6 -2.040HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  12  24....................TTGCSDLLDKEPPSAISDGSFWTGEGDA--MLALTGCYRFQTGWSHDDFAT-TEKENFSTLMASSNTVATNSNLRWYWGN-YNTFLENITDCPMEESKKEQWSAEVKCLRAYFFLNLAFYYTVPMPLKTLSVDEANSISQTSQVEKDLKTAIDLLPVHYLRGIW.................................................................................................................................................................. 211
7 -1.720PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  21  1................................................MNTETLTYLLE-------HPDKITSEETTQLRTVVEEFP---------FFQAARALHLKGLKNEDSFLYNTYLKKTAAHTQDRTVLFDFITS.............................................................................................................................................................................................................. 76
8 -1.630HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  12  5.ETRYADCVNGVGNAASPVGAYASSTEWNYDNEVAYG----YGLSYTTFTQEIQG--QPEISVNIDSETGAPQAYATFNVKVTNTGKVPGKTSVQIYGQAPYT---------------------GLEKV----AIQLLNFEKSSELAPGASEIVSVKVDLQYIASYD-GTTGTYVLDPGTYYFAAGNGAHDALNNILVLQ.................................................................................................................................................. 182
9 -1.570PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  1MTVLSLKEVKLLMNDTQKNDLFYVCCLI---EFIGRKTKNRRSIIVQKLGKKELIRQLDIAE-------ANHCLSFEQV----------SDEIIEYF--------------NIQEGDFHTVESCKYNVPSVQAIGKVYHRLIISIISEQDNL--------VDVLFEVFNSFISDEISDFNSSVYYSNP.............................................................................................................................................................. 146
10 -1.540PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  20....................FDRVQFPLANIQLTQFIMEN-YFMLQQFIGELKESSFIMEQEKDTGQLFMITDQGKKTLTYFISRIPEEKRLKIDHL---IKKEEFVRNTEIKGEYEKLTDNEYLVKLSVIEQGTPIFN---LKLSVGNVKQAKDMCEKWRSDAQELYGQIINLLI.......................................................................................................................................................................... 174

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.