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Query: [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNLAWLQGLSLGLLSPPAPALLIFRSFTMAKVLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGSQLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGCTLVDLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTAIETAQIGGAALDVFAQEPLGESRLREFSNVILTPHLGASTEEAQVNVAVDVAEQIRDVLLGLPARSAVNIPGLTPDVMEKLRPYLKLAETLGTLVGQLAGGRIDRLTVCLQGDLAEYTNSQPLVVAAIKGLLSQALRERVNYVNAAIEAKERGIRVIETKDASVRDYSGSLHLKATGTMGEHSATGALLSNGEIRITDVDEFPINVPPNNYMLFTLHRDMPGIIGKIGSLLGSFNVNIASMQVGRKIVRGDAIMALSLDDPLPDGLLSEITKVAGIRDAYTVKLLast
1 -3.340PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  9  15.....................................................................................................IEKKNLRTDDGLRLEILSPGWWNNEEGPDFKHAEFFLEGKGLIRGSVEIFASDWIHHKHENQKTYDAVLHVVMWNDLKGRCVKNFSGKVIPQITLSLYLEAELDEI--IETIDVGSYIGNKQVIPGYCNLEMWIGGFLDYAGDERILQKAKKYEKWIENKPFERVLYEAIME------SLGYKNNKKPFLMLASLVTAETIQSFVPEYTPAQEKKIIAQSLLLGMAGLLPLNEEETKRFDDETIQYFDRISTWQGIKPKIHQTPLTRESWSYTGIRPANFPDRRIVAIANILSEHLDNGLFRYILRIFQKRDDTKKNTRGFKSFVNEFLSPFLETHDAYWSYRYTPGGKKLNKPQKLLGKERTSNIFVN.................................................................................... 387
2 -3.150HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  12  10...........................................ELLERIRDIRASEKRVYRKVKEIFQVAQSFFKSVQNKLEYAATGHTAPELIAKRADASKDNMGLTSFKGVKVVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLRFNGREV-LENFGTVKREVAEKLA--------YEQYDTHRRALEAADDVDELTADVKRLK........................................................................................................................................................................................................................................................................................................................................... 199
3 -2.770HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  14  3...................................................................................................................................................................SLLLSTFAMMGL--IGFFVAGVIKLIASAADSLAFYSSHQE------ELARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGV------TKHPGDNRGFYHGVSPGESERGLMDYFYPEDTRTMFLRKEEQMLQHDKKNNKTSSTNKK.............................................................................................................................................................................................................................................. 144
4 -2.670PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  12  19................................................................................................ETGERAFGYDIWTKYNTTEPVVEARYEGELNPDMKAKIAELG-KTDPKAAQELYRSVSYHVDHGNGLDCYGPTLGGGTTA-AGDTIVYPYCYATQEILDNGPYNPLVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHEPDGAIVADAANGYM.................................................................................................................................................................................................................................................................................................... 194
5 -2.550PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;  ali follow..  13  68.................................ITPVLEQYGFASFEEALEYCKERNVNPYDIVKETQPI-AYVLGAAIALKEDAKNAAEAAEYIGQ-GLQAFCIPGSVADQRQVGLGHGRLAARLLNNDTQCFCFLAGHESYAAAEGAIK-------AMNANKVRHHPLRVIGLGKDAAYMIARINGFELDVVSERRFSTSQRGDINCYGADDVREGVAIMHREEVDISITGNSTNVAGTYKKERLEANQAYFSVASGGGTGRTLHPDNVAAGPASYGMTDTMSSSVPAHVEMMGLIGMGNNPMVGATVAVA................................................................................................................................................................................................................................................. 378
6 -2.330HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  12  8..................................................................................SALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVADRTLWNTMTREQQSLQVIRALSAIHPQW------------------FAGLSAACVGLQHNYSLHDGTV------------HIASKSGIGGGDEARLNRIYINRIPTRKHNILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVEVSVTKLLKYANPLSENGGESLMRGQISSCWQCSS.................................................................................................................................................................................................................................................... 223
7 -1.790HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  14  1.............................................LQTNYKRQRMNIFDIAKQNQE----KAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLRDIDFHIYSSPDMIHIREGSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKIIGVEYYQAVIGVRDYSGFKEWRKQH................................................................................................................................................................................................................................................................................................................................................................................. 193
8 -1.740HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  19  1...............................................................................................................................................................................................................................MIYLHARGLFHVLLLICNRELLLI-----------GKRKDEDDMAKSTKTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKAEESKKRTHRLCQIGGAVESVLGCP----------IEEEDLPKLIGFLKRQETNGKFFSKAMQKEL..................................................................................................................................................................................... 129
9 -1.730PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  6  44..........................................................................................................................................................FSQVAYPNTIIAGVDVSFSNASSAATKVNSAWKHYKLTVTGDDFSWTYQ-PESNEPIVAAAKEIISHNEPVRLVESLSGKTKTTATSNEVDLDQDVDLS--------FDQKKFEKDLGA---AIDEFNEGRSGTFEANSSYDEQAFTVEKARSNEKLNRE-HVIKYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGV-------NVTLKLNGEDAGKVDGSSVLQWISFALDTSQISSWAAELANGFNTVGSTRWWTRADGKQCAVEGGDFGWSIDSSSLAKQVEDAINNKQTGEI........................................................................................ 355
10 -1.570PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  8  65.....................................................................................................................................................................................................KAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLL----TYFGKTTYYRIYRKERYITIQ-----EQDYIRDSFVRAGFSSDLIDAMVYMYELQSAMVK.................................................................................................................................................................................................................................................................. 156
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.