Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public

If you have questions about the server, please let us know.

Query: [G] COG0120 Ribose 5-phosphate isomerase, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230
# Score Template Links and tools%idFirst MTERNTSTDSPEKRAAGIAAAGLVSSGMLVGLGTGSTVAYTIKELGRRVREEGLDILGVVTSYQSEMLAIEAGIRLTTLAQHPELDLAIDGADQIDSELRAIKGGGAAHTREKIVSVSARRFVVVADESKTSKQLDKLVPVEVLPFAKEPVVKKIRELGGKPQLRSAVKKDGPVITDNGNFVLDVEFGVIKDPEALALQLSSIPGVVEHGIFCNVSELYIGNKDGAIKIITRQKLast
1 -3.550PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  10  22TNKLPEINNTMSAEERLKACEEQLEDGNLVCLGAGYITVALDQPI---KNGKGSDIRILGNAFYSANDPKYGDATIGGSVEPGIVYVGVGSSPETAEWYEL---AGSEYYTTEMHRFEIT.................................................................................................................. 137
2 -3.080PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  2...................................ANLDVLFERLSRSSFRRRFRL-----GVQEQQYLANKGMETILEHGKDFIAQRLAPAEIPNDGKQTPCKGHPVFLAQHATGTCCRGCI--IEAGKSLSQEEQAYILDVIAHWLDLQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPEIE................................................ 150
3 -2.510HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  10  21........................PVGAYASFGYGTTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNTG--------------KVPGKTSVQIYGQAPYTEGGLEKVAIQLLNFEKSSELAPGASEIVS-----VKVDLQYIAS------------DMEHDNGDGTTGTYVLDPGTYYFAA................................................. 167
4 -2.140PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  15  85.........................DCYKVGLGGGTTALMAGDTI-------------VYPYCYATQEILDNG-PLRFTVKLVYNPLVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLA............................................................................................................ 173
5 -1.810PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  18  37...........................AVVDGQGGGIGKHITARLRQELPP-EVEILALGTNAAATVAMIKAG-----------ANEGATGERAI-PRVEAITGSLAIILADAMLGELTPAMAAAIAASPARKFL---LPIN............................................................................................ 139
6 -1.720PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  14  11............................VLVLGLVAALTEIRHSHKRRAAEAKGESLPEEPVRVVPPGCCGMHITCEKDSLLTAVSKSIVYYD--DEELDRYAGVLPEEYNTEAVEEFEEILSTLQEEERSLQMRQIQMPISIKEQALFIVSEH................................................................................ 139
7 -1.650PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;  ali follow..  11  2..................................GAAVRKQVRGAISFFLVALGICLAVSCTYRKDERILYRQVPHGRWQKRDVLDYEILIPDYTRSYSLELL------IRHDNRYEYRDLALAYEVSVGERLIFADSVDLTLADKPQQWNGKGVAKQQNRFRLPISAR-----FPYSGLYKIELK----------NMRVPTLSGITEVGIRLTEGRD................ 165
8 -1.630PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  13  104............................................................................................NQLKDILETIIGVEDVSIV--VNVDATSLKIFEKNRKTQET-----------------STNETDKQGGKRTVSEMSSDEEIVIIKNGD----------ETPVVVQTKKPDIRGVVAQG-IIEAVTRVLDVPSHRVAVAPKKM 227
9 -1.260PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  13  227.......TDEEIIVKVLESIDEYYNEGKTQGVFGADTLILSA-------RIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVN-ANLIRERMKA..................................................................................................................................... 322
10 -1.210PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;  ali follow..  18  12...................................SFISYGNLQTATMIIGTPLSIAESYVHKNMGEILQQTMSITQKPTDKNKLFLNINHSDWFKEQLNKLNQSVRMKQRQKIVRVQSSNDSILLDFSKKVK..................................................................................................... 115

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.