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Query: [E] COG0169 Shikimate 5-dehydrogenase, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLEGALLast
1 -3.880PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  12  103...........................................ENQLKDILETIIGVEDVSIVVNVDATSLKIFEKNRTNETDKQGGKRTVSEMSSDEEIVIIKNGDKETPVVVQTKKPDIRG--VLVVAQGVDNVQIVTRVLDVPSHRVAVAPKKMKE....................................................................................................................... 229
2 -3.500PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  7  2..................................................................................................................QSEDSRHSKYVIRIICEGEKTEP-LCDKLLDENGGEEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGK--QGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAFEEAEKLIDDK-----KVNIAFSSRSFEYYL-EYLYHPFHATECGERIDGKK 173
3 -3.000HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  10  1..............................................................................................................MFSLLLSTFAMMGLTFVIFFVAGVIKLIALAFYSSHQEELARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGVTKHPGDNRGFYHGVSPGESERGLMDY---FYPEDTRTMFLRKEEQMLQ......................................... 130
4 -2.920PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  11  3................................................................................................CGAKVSLEILNYAEFASVTELYTDEKGCVSITIGLG----DIHIRAVKDGFFAEAMGHVRTQEEITLI----NDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHL--FMEIYRFLTVDGNNVDSNQDRLALLKTLKVK. 178
5 -2.430PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  5  93............................................................................LDEGSETTYAKVWQAIMFED---TQNGDYDYNDLIIHVKNTASNHAYQHPTEPIALGSTKTIKLGCILSDGSTHMISDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFSYPQEK----------NSLFETYPGFSDW...................... 286
6 -2.360HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  8  8.NTDQARIRALKTAVVKGDMCDVYDLPVSLGEARIFLSKFETAHSYYVHCYGEQSRNSKKHQANVKTARLYISHFIQVLN-----LAVIRMEIKESHKALYGLPVDNFS-VPDLSSEASLAEWGQKIIEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKC-YGLIIKNRIRRFFKICLS---------IPIFFWKSLQKITFRYGTCP................. 263
7 -2.320PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  14  43........................................KITVKELPQVVKSTLSKDYEGTIVKEAFVAEKVYKIIVTAIKEDQSTEEITVLLNEKGEPV................................................................................................................................................................................. 107
8 -2.290HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  13  3...............................................EKEVSEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQAVGGIEMTYPFDDEVGILLNGNGK-----------GLPLNRALYDDHGQVYDAIAGTFLVVGLTEDDFTSLTPEQIEKFKEKYQS............................................................................................................. 116
9 -2.240PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  14  35............................................................................................................................RIAVVQGGGIGKHITARLRQELPPEVEILGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAITGSLAIAMLGELTPAMAAAIAASPARKFLLPINRSGVEVIGVTPEPLPHLIEALVNRVKFFYQE.......................... 170
10 -2.190PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  13  130.........LIAADCTAYAYASFHEKFIKGHVTLIGCPKLDSVDEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATISIDGRIL................................................................................................................................................................................. 223
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.