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Query: [F] COG0208 Ribonucleotide reductase, beta subunit, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLRQEAKRMKATMAYSTFTQKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDYGKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELTNDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAATNNPIPWINAWLSSDNVQVAPQEAEISSYLVGQIDNEVSADDFEGFELLast
1 -2.400PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  6  135......................................................................................................................................................................................................................................................................................................................VVTPDDLDNAGNVLFKLNDADKDEEKLHTIRETDLFEIFSSQVENKNVIDSLMGKYLDGNGNPLSVRKTKSVVPVSDGW 220
2 -2.190HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  8  3.......................................................................................................................................................................................................................................................QQKNEVQSLLEKAMFQATVADFWMAGLELGVIKTNQRDEASPKEVCSGIPQFIIGVKGLAGFLGTSVSTVNRWKA-LLDDATLQCGKVVIFELPKVIEILRVSDKKNKFNVKSKKYNGKESN.................... 125
3 -2.080HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali follow..  6  62......................................................................................................................................................................................................................................IYALMTVLKGVAEIEMLCLNSRESFEDNKRFLKSQMEQEENPVIRRLLEQDQTHLDRIQVQMATAREFLIMLRLKD------KESDIFPYLS-RIEKSLKEQSFSVK-RADKEDIKRILAVYYEQNVTTEKFEDFDGERWIIPEI.............. 199
4 -1.950PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  17  1........................................................................................................................METIKFNSEAHELFYKEMLARTNQTDVY................................................................................................................................................................................................................................................. 28
5 -1.870HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  17  1.............................................................................................................................................................................................................MFSLLLSTFAMMGLTFVIGFF----------VAGVIKLIASAADSLAFYSSHQEELARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGVTK-FYHGVSPGESERGLMDYF-YPEDTRTMFLRKEE..................................................... 126
6 -1.800PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;  ali follow..  8  1.......................................................MAMHTWFECKIRYEKVMENGMQKKVTEPYLVDAL---FTEAEARIIEEMTPFISGEFTVSDIKRYSELFPSDEESADRWFKCKLIFITLDEKSSTQVLVQAADLRDAVKKLDEGMKGT........................................................................................................................................................................................................................ 124
7 -1.700PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  5  38.VAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRIGL---HQPGLGEVYISTGSLYLCTTALGLPASDDFWSQPDAP.................................................................................................................................................................................................................................................................................................................... 119
8 -1.570PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  13  17.........................................................................................................................................................................................................................................................DENAYQKLLRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQV------------ITQKEVDAVI--------AIMGQPEDYQVDEDI............................................. 91
9 -1.480PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;  ali follow..  10  1.....................................................................................................................................................................................................................................................MGLEDDFLLNDA--KTIEFIRNYLPQELKEKFSEDELYYFLDLIDEYYS-ESGILDVQPDADGYVDIDLEQVVEFIVKEAKK.............................................................. 82
10 -1.430PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  10  1........IKEELVRCIWFGQHIEKKNLRTDDGLRLEILSWNNEEGPDFKHAEFFLEGKGLIRGSVEIHVFASDWIHHKHENQKTYDAVCLHVVMWNDLKGRCVKNFSGKVIPQITLSLYLEAELDEETIDVGSYEMRKQKITQQWIGGFLDYAGDERILQKAKKYEKWIENKP--------------------------------FERVLYEAIMESLGYKNNKKPFLMLASLVTAETIQSFVPEYTPAQEKKIIAQSLLLGMALLPLNEEETKRFDDETIQYFDRIFSTWQGIKPKI.......................................................................................... 278
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.