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Query: [E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWALast
1 -2.320PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  11  95.....................................................................................................................................................................................................IQDYEQEYENQLKDILETIIGVEDVSI------------VVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDKETP-----VVVQTKKPDIRVLVVAQGVDNVQIKKT---VPSHRVAVAP.............................................................................. 224
2 -2.280PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  13  5.................................................................................................................................................................................................................................................................................................................................................VNINLANMLLRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQ----------VITQKEVDAVIAIMG.. 80
3 -2.190PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  60.........................................................................................................................................................................................................................................................................................LRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQ---KNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDILQRSFQRN.. 189
4 -2.030HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  33.........................................................................................................................................................................................................................................................................................................IDENGKSRHSVWL-----SDDVWQEVDAFYKLDNCPIRNEFAEKA---LRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGERLGRLLLKLAVEHNMTNHLLG.............. 127
5 -1.950PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  10  2................................................................................................................................................................................................................VCGAKVSLENYAEFASVTELYTDEKGCVSITIGLGDIHIRVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDEMCEVEAPVKYQFNLTREQQATNRSKLREAKLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLK....................... 193
6 -1.740HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  3.....................................................................................................................................................................................................................................................GVFCVEGFSVDVFIVHIR------------------------PVLFFCHFSVSDTFANKAASGGNVVSENTIAVHEQTDAYIAMPQLPYLPDAELAGMGGQLHSLTYSRIQRISTTEYIFSLKDWAAVLSLHREKLYDATAYYRCQPVCEYYIFTLRRI.......... 148
7 -1.720PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  13  4...................................................................TSASVLN---LINPEDIESQT---ILKDAAATALYGGANGVVLITTKSGRRGKTH.................................................................................................................................................................................................................................................................................................... 54
8 -1.560HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  12  9...............................................................................................................................................................................................................................................................DELLERIRDIRASEKRVYRKVK--EIFALSVDY---KSVQNKLEYAATGHTAPELIAKRADASLTSFKGVKVRRGDVTVAKNYMTHEE-IVNMYLDYAELQGHIPMHMADWESKLGDFLRFNGREVLENFGTVK---REVAEKLALEQYEQYDTHR... 179
9 -1.470PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  12  1......................................................................................................................................................................................................................................................LIAPDGSFPPVGRSIAYRCGAFQLLAQMALRR--------------ELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAGWLRI-EVYISTGSCTTAFLPLGLPASDDFWSQPDAPWTSARV......................................... 125
10 -1.390PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  18  10......................................................................................................................................................................................................AHFKRYIKEHVKGKKTGL--FITLGAVGRELLNEGGNEILAEFICQGAI....................................................................................................................................................................... 68

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.