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Query: [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGLLast
1 -2.820PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  12  29.QGLLH-DMSKY-------------SPTEFLVGCRYYKGYMSPNNAERADRGYSSAWLHHKGRN--------KHHLEYWIDYAVSKPGDDKTHTKMMPIRYVCEMFIDRVSASKNYQKEKMIHPDTKAMLEYLLVMLSVKGEEYTSYIKKEVLKGHIP................................................................................................................................................................................................. 185
2 -2.360HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  13  4......................................................................................................................DTKLINLKLWGYITMKKMIAYCGLDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIALEKGVATCGDCLDLERCPTVGEILENNPSALKNLKG........................................................................................................................... 127
3 -2.190PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  11  233.........ESYFLLAEA----AEYG---ISNITPKELGIRSSFEY----FGVSEYADQYINST---YNYPTASKTLYGKAMNDHLTKIITQKYIAQMPYQVLEIWND-LGLPFFEIPANESDLIGSDMVNVLKKDSWKNGQQWDFYPQRMR-----PTTLDNADPENYQK-----AVELLGGSDVIITP................................................................................................................................................................. 434
4 -2.090PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  11  11.............................................................................QFSDMKSDSPDLKTAMLGRIRADEPRKVWTDFVD----LASRDAVDKTLQRLTKAEALRRIDRGLGFNKLTQKPNPPDPRSVIDAVGRRDQTRMLVDGMTAANDLGL---TDAVPAKIVVHTDARRRAIKLGNATITFGRPAMRVVQALHWLRDLLVRDGESEQIQRKLAKLFEDPAVGPPLKADLAAGMTALPTWMLVFLKPLIET................................................................... 227
5 -2.000PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  9......IDIKNQFMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSHP--GIRTLLHKAGYKDDADCEGMLLELRSRIGGNNSFPHEIGLFIG-YPAKDVAAFMGLVRLPFTCQRLWKIYGNPARSLALAEQYRCCRNKMGAILARGTSKTLEIDRSDHPFFCQ.......................................................................................................... 248
6 -1.830PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  13  12...................................................................................................MVIDVAYLNFVINDLRKYFEPLLGRSLQTLFTMYLAMDAGLKGSDNDVQVLLVYDKQSPSDLK-LDGVAFKASLGEFSFMAAPSEGFVSRGDLYLDLLQIVLNAAEVKKLIVVPFNEEYGKEVENVLRECALENAGHKEEAKDI............................................................................................................ 167
7 -1.610HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  12  3............................................................................EAVAMAQDAIGLMLEDCEVCPKPSLPSAIHVDTGDFIAMIPFDMEEYQKQFKPVKKTLSIPGWLHINFSSVLQKGLKS..................................................................................................................................................................................................... 87
8 -1.430PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  15  1..................................................WSVREGELLDEAVDFCRKRGL------EFYAVNSNMPEEEADMSALRSRKVSADMYID................................................................................................................................................................................................................................................... 52
9 -1.340HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  14  10......................AMMGLTFVIG-----AGVIKLIASAADSLAFYSSHQEELA------------RLKRIRKLHQKVATLITESALSDEEYGSDGR--------------EDFSRGVTKHPGDNRGF-VSPGESERGLM-----DYFYPEDTRTMFLRKEEQMLQ................................................................................................................................................................................. 130
10 -1.240HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  10  1...........................................................................MSKKKRGEERMKE-ILKKVGKKNSFKVPEGYFE------------NLTSEVMGKLPEK.......................................................................................................................................................................................................................... 48

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 1 2 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.