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Query: [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGGLast
1 -7.300PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  10  1MKKFLSFIASFFMVSFVITSCLDDDNNIEYSPDATIHAFALDTAGLGSYKFTIDQLSREIYNE-----------DSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKVWSTEALA-GISPNQTKEYTIKVNVHQHDPDSLRWNHVGKMQDEIIGEQKTIEFNNKILTNLKVYQNSNYSNWTAAGTNTTGDLTSTLPNSILP--LNGIILATANNKVYE-STDGV------AW........ 239
2 -7.230PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  1MKTKLVAVIALIFCAFMAEASKVEGNGNIITKEISVDNYSEIELGG---NIEYSGNNFWGRSASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKY----LKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGS............................................................................ 192
3 -6.910PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  1MKKTIFYSLFSALFMLTSCSMFEID--------------NYEEPSETIWGVDEATGKRVLTDQGIRVRLTELSWDGQNTKIFKGEYNVRIDSVNTEISGTTKVKFEQPFLNVEFVGNPQVSNGVIKAQVRVT................................................................................................................................ 159
4 -5.890PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  10  1MKRNYFFTMLAAVLLAVAGANAQESAE---------------FRPAELAG---QLCHYVSEIPDVPGILKPSNTFKVLSD------DGRIVNFTMIPGKDAIITGYGTYQQLTDNSYK-ESIEKNIHLPMLDHKDNILEFEIGDDGVM................................................................................................................ 125
5 -5.190PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  20  1MKKVLVALTMVMGMGSAVAFAQEPPQVVKSTLSKDYEGTIVKEEKENGKVYKIIVTAIKEDQSTEEITVL.............................................................................................................................................................................................. 99
6 -5.140PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  17  1MRKLGFTLVAALAFSVSAFANNANDTINVAGKWDGTINKAKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNYGNLKLMKNT-LTEKQYSDYL............................................................................................................................................................ 105
7 -4.990PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  1MKTKFIYVVLMALFLGSQMTLSAQNEE------------------------------------------KERKQRPTPEQMMQMQTNQMVRALMLDDATAAK--FTPIYYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLDIREKYYNEFSKILSQKQIMKIYQQEKS................................................................. 154
8 -4.910PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  1MKTGIRVTVYALLAMILFSCEHKEPHMVTLRVDFDWKNAPQADPEGCVYFYPEEGESPIRFDFAGK--------DGGSVEIKEGRYRILCYN---NDTESLLFRGMEGFDTHEGYTRDGNVFESIYGNGAHYAPPAKGSEDERVVICPDMMWGSCARNVEITELGLSYECISFADKDKVEWIESSEHVITLYPAELICTYTYEVRNVKNMEYMTSSMAPSMLFANEELDRECVTVPFETELHLESSKMTGKF---YTFG. 257
9 -4.860HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  12  2MRRKNITWVWLLGAAFMVGCGKQVPENII--------------QPDRME-YDYHLSISMGNNLSYSDNYQKEAY-----------KNYVFEKHHIT---EAEFDSSMVWYTRHTEELASLYKKLGERFRSEKKH.............................................................................................................................. 109
10 -4.310HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  1MKTLKITFVMLMTALFLVLPSCSKDDEVVNAFQQKYPDVKNVKWEILVGAYEAEFQHIVLDKVEAQAYITQGKWVRSEFDVTKDYQDSSSL--VVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFY---EFDEPDSELLINFDGTLY................................................................................................................. 163

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.