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Query: [L] COG1039 Ribonuclease HIII, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNIVLKLETKERQQLAEKYKSYEQVSKNPYITFFAKVGKTSISVYTSGKVVFQGNEAEKLASDFGHIAQVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGNLSDKIAAQIIKSQGVDALNQLAKLHFANTQKAIKIAQLLast
1 -3.690HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  12  28.................................................................................DERGAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALG.................................................................................................................................................................... 74
2 -3.150HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  17  1.......................MDEKEVSEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQAVGDIEMTYPFDDEVGILLNGNGKDAIAGTFLVVGL---------------DDFTSLTPEQIEKFKEKYQS............................................................................................................................................................... 116
3 -2.870PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  30...........................................LANKGMETILEHGKDFIAQRLAPAEIPND-------GKQTPCKGH---PVFLAQHATGTCCRGCIEK-RIEAGKSLSQEEQAYILDVIAHWLDLQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPEI........................................................................................................................ 149
4 -2.340PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  25................................................................................TDEKGCVSILGDIHIRAV---KDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGN---------NVDSNQDRLALLKTLKVKDYKDVTASVLEDHL................................................ 192
5 -2.340PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  14  42.............................................................................VTGGKAVTFENLQGTWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAKV--------------VEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKAINKLASEYD-GMMLG......................................... 202
6 -2.250HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  39SRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGERLGRLLLKLAVEHN------MTNHLLGGDMDMTRDEYSKMRGSSVREVSATH............................................................................................................................................................................ 152
7 -2.160PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  20  117................................................................................LDENNNG-----MIITGIYGRSETVTYAKPVKDGKSNSLSVEELQALQRAKENT.............................................................................................................................................................. 166
8 -1.990HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  12  2..............................................................................................................LGITNVPDKKNYAIDEL--------------LSAQAARNLYAGKANAQVVNYLLESPRFLDLTYILEQYFNDTVAAGYAAQNQLYTTISSLT----RKTVKTEAGEQAARDIAHLRTTIENQFMLAVKEVKKEIGNDFAAMQSMTAE................................... 139
9 -1.910HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  60.................................................................................................LSIPGWLNDAAESAHINFSSVLQKGLKSEL..................................................................................................................................................................... 89
10 -1.900PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  2..........................................................................HRSISGSD-------CGPTPTSSTLPLTPYTPAMPFLTRSRIARVA---------SLLSAGVLALVLLSCDGVGDFGDTNEDPTTANDPNPDLEFTTLQLGVSGSRFDMWRTNLIYTMPIVQHIANPGFYAGNFNQYVGAWSASFFDTRYGGGPNGSNFLRTVTNAETLISELEGKPRQVNRLAATRRLTDVYGDVPYFDAGK-HYTRQDSIYM.... 215

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.