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Query: [R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIYEIAMLPVQKDKISEFRQAFGDVVPLLKRARGYRGHVLAQGVETPEVFNLIVRWRSLNDHTPGFEASEDHEQFMEGIQDYFSGEPTVYHLEGDNSGWSDYRHGKSGAALast
1 -5.340PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  12  231......................KEKKELRGGADGHVLAISEYEPGADFTYYWGAAWSK-----ADIKDSAAWNAYMADFAQKVRNPLTV..................... 292
2 -3.860PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  11  113SDADTAQAEQKERLQQNFIGYFREAMYKRHKN---------------SSTSILVNWKRAMDFLKMYAGEN--NAFAEEYKRFLLTAP....................... 189
3 -3.650PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  10  10TIESAIQKAAGKYVCGCDQTAVTDIHLQPDQTSG--QLTIYNDDDEELANVMIEEWATYDGDDFMENVKPNLKSTLCRMKD............................. 88
4 -3.050PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  9  242......................DQIQAACNAANNFLGVNVTLKLNGEDAGKVVLQWISFADPANPTLDTSQISSWAAELANGFNTVGSTRWWTRADGKQCAVEGGDFG.. 331
5 -3.000PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  4  45......YLQLSSQQNEQVASICDYFQEQMKV---------ANSSKKNSDQKVRNAVYGNLKLMKNTLTEKQYSDYLRLMAL............................. 110
6 -2.980PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  5  153...............EGMLLELRSRIGGNNSFPHEIGLFIGYPAKDVAAFMCQRLWKIYGNPARSLALAEQYRCCRNKMGAILARGTSKTLE.................. 237
7 -2.750PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  22  96........KYTKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRS.................................................... 145
8 -2.570HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  6  38..................................................AVESTWSTASTQIKSVVDNVVFPAIDLILAVFFFAKLGTAYFE................. 80
9 -2.260HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  13  21....................................GFALGENSRAPNPFVT---WQNGQDGHRDYFWGHYMNEPDMAERDLLNRARDYQR................... 73
10 -2.250PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  12  110.......AVFDKDEHPARKDAFEEAEKLIDDK------KVNIAFSSR-----FEYY-----HFEYLYHPFHATECGERIDGKKVN......................... 175
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.