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Query: [K] COG2378 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPTDNVVSVVSPYHMEMYNMRKASRLFEIIQILRLARRPVTAQTIADMLEVTARSVYRDIAALQTMRVPIEGERGVGYILRPGFNLPPLMFSIEETEAIVLALAMVDRSGDAELRQAAKKVSDKIAASLPEPLSKTLSANALHAWGSIAPAPAGIDLATVRRAVRDEERLDLCYSDESGVETQRRIRPIAVIYYSETVNIVAWCELRHAIRNFRSDRVLDCAATGSFFKMEGEKLRRLWMSGWQSGQPGGELGRPISGVTLPLast
1 -5.770HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  11  1LQTNYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLLMKHRDIDHIYSSPLNLTDSFQAMARLAENPSIKRIECANTAEACIEWHAWYQNEENGSRYDGYFEKVAQRISEIMTDEIRETILRLKYETPETEKIIGVEYYQAVIRDGVRDYSGFK-EWRKQHPVTGVVEWMP.......................................................................... 203
2 -4.160HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  13  52...................................PQFIIGVKGLAGFLGTSVSTVNR----WKACGLLDDATLQCGKVV---------IFELPKVIEIL.................................................................................................................................................................. 103
3 -3.220PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  13  1MIRRSSEEVLQFSDMKSDSPDLKTAMLGRIRADEPRK-VWTPSDFVD---ASRDAVDKTLQRLTKAEALRRIDRG........................................................................................................................................................................................... 72
4 -2.740PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  8  1...................MKIERLFIYCLLAGTSLLASCNSEDMTDMYPLTFTAMQGEVVATPQTRVSDYDDTDGKHK---------SKWDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSTVYGWYPNT-----ADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNL--------EHQLVKFRVKLNGDV------------------PNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAP 224
5 -2.500PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  9  1..............MKIKFLSFIASFFMVSFVITSCLDDDNNIEYSPDATIHAFAL--DTAGLGSYKFTIDQLSR---EIYNEDSLP-----HADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKVWSTEALAGISPNQTKEYTIKVNVHQHDPDSLRWNHVGKMQDEIIGEQKTIEFNNKILTYSV............................................................ 179
6 -2.290PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  9  69.................................KKPHGKQTIKQLNAQIKITDENIKSFDRVARKYGI---------YSLKKEVGADPVFFKAKDVDVMTAAFREYAGVELKKKQVKKPSVRKKLQKSVERKAKHR.............................................................................................................................. 173
7 -2.100PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  17  1...................MKVKTSILLLLMIATALPSFGGNGNGNGTDSLATRYVTRATMY------------GVGYTNVFDTYLSPQEYK.......................................................................................................................................................................... 62
8 -2.050PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  10  64...................IEKVEEAQVEVEKVHKRLDIINNSFCIQKVGMVRYNAFADMGSDLSYSYALLDENNNGMIITGIYG-SNYSLSVEELQALQRAKENTIDTLELQGFRSKKEL............................................................................................................................................. 181
9 -2.020HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  9  8.................................EMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQA--------GGDIEMTYPFDDEVGILLNGNVYDAIAGTFLVVGLTEDDFTSLTPEQIEKFKEKYQSPEIFTLFNGELHVMKMPPEEEKEQKESRKNDAKQKNPA-----KKKNRSGDAR.............................................................................. 164
10 -2.000PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  8  87.................................SDDKPKESIQDYEQEYENQLKDILETIIGVEDVSIVVNVDATSLKIFEKNRKTQETSTNETDKQG---GKRTVSEMSSDEEIVIIKNGDKE-TPVVVQTKKPDIRGVLVVAQGVDNVQIKKTIIEAVTRVL-PSHRVAVAPKKMKED.................................................................................. 230
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.