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Query: [S] COG2512 Uncharacterized membrane-associated protein/domain, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDLLMEMNLRFYIICIAALLTLLASASLALGVPFLEDNNVTATVHGATYAKDTLELLNDTVISINSTPSQSMVAKDGIYSFELAPGDYAITARYYRNNTLIYSKETTFKIEGEGNYVFDLLLYPVSEYPVTEPIQDSYSIDPPETIGIGPSTTDYLPISYLSIVFVLILLLGGGYKFSSKHKNTNKNKFQERKFDIPGILVKVPGRSTGLGVRSESSGGAVSLTEPIIEPAGNPDIETAALNRIPLSPELCEVLDIIRGHKGRITQKDLRSKLDYSEVKVSLMLSELEKRGLIRKLRNGRENILVLVDEEHLast
1 -20.200PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  10  1...............MKKTIFYSLFSALFMLTSCSMFEEPSETIWGEVVDEATGKRVLGIRVRLVQHNPDFYCMMDGTFQNKIFKGEYNVRIDGPFITDGTLLHDGSVNTEISGTTKVKFEVQPFLNVEFVGNPQVSNGVIKAQ....................................................................................................................................................................... 155
2 -9.750PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  20  15.................................................................................................................................................................................................................................................MKSDSPDLKTAMLGRIRAPRKVWTPSDFVD----SRDAVDKTLQRLTKAEALRRIDRG............ 72
3 -7.250PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  9  1.......................................................PVCGAKVSLE-SVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAM-------GHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPK-----------------------------------------------DSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLA----------LLKTLKVKDYKD................. 182
4 -5.340PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  11  7...................................................................................................................................................................................................................................................EQLAENKLVLLYIFDRVQFPLANIQLTQFI-MNYFMLQQFIGELKESSFIMEQEKDTGQLFMITDQGK 78
5 -4.810HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  12  58..........................................................................................................................................................................................................................................PEISVNIDSETGAPQAYATFNVKVTNTGKVPGKTSVQQAPYTEGGLEKVAIQLLNFEKSSELAPGASEIVSVK.... 133
6 -4.430PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  5  70...................................................................................................................................................................................DEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTPDDDNAGNVLFKLNDADKDEE-------KSLRAALTLHTIRETDLFEIFSSQVENKNVIDS... 192
7 -4.350PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  17  419.......................................................................................................................................................................................................................................SQEDFHAVLSLAEPLYCHATHILSFLPNTEDEFTRTQLLEAMGIKENTALTWLKRLTKHGKLISMGKG............ 507
8 -4.300PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  18  1MNILNNKNKRTSIFKALALCLFAAVSFTFVS-PNKVTKGQTVEIRCELKKTGDFANTLYTIRYFQFEGEGTLKMDNGIYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNN............................................................................................................................................................................................... 146
9 -4.270PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  16  235..............................................................................................................................................................................................................................ESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLAR----VEQKN------FSKA---QAYRILEKSDQIRAIEKLQEN......... 313
10 -4.210PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  10  1...............MKRNYFFTMLAAVLLAVAGANAQESPAELAGILCHYVSEI--PDVPGILKPSNTFKVLSDDGRIVNFT--GTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEI............................................................................................................................................................................................... 119
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.