|
|
|
current user: public |
|
| Query: [S] COG3111 Uncharacterized conserved protein, from VFDB |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 | |||||||
| # | Score | Template | Links and tools | %id | First | MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKVNP | Last |
| 1 | -9.440 | PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492] | ali follow.. | 14 | 1 | MKKTIFYSLFSALFMLTSCSMFE-----------------------------IDNYEEPSETIWGEVVDEATGKRVLTDQGSEGIRVRLTELSWGD---NVQHNPDFYCMMDGTFQNTKIFKGEYNVR.. | 96 |
| 2 | -7.050 | HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455; | ali follow.. | 10 | 1 | MKKLLLAMIAVAALISFAACDHNETYADQRDRELDSINAFLRNENIKVINEAEFEKRFEARKAGDKTDTDPNNNEYVLFESNGIYMQVINDGCGDYIAKGKTQNVLCR...................... | 112 |
| 3 | -7.030 | PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184] | ali follow.. | 9 | 1 | MKRIVSMMVIFTLLLGGMTHVQAQTSKAAXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQ....................................... | 99 |
| 4 | -6.690 | PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete) | ali follow.. | 6 | 1 | MRKLGFTLVAALAFSVSAFANNANDTINVAGKWDG-------TINKAKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNS.............................................. | 77 |
| 5 | -6.380 | PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671; | ali follow.. | 12 | 1 | MKKVLVALTMVMGMGSAVAFAQEPVKLPAMEQNQQTSQDKFTKITVKIVKEAFVAEKENKIIVTAIKEDQSTEEITVLLNEKGEP............................................. | 106 |
| 6 | -6.230 | PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443; | ali follow.. | 13 | 1 | MKTMKFILACVLLLSPLLCQAQKNLFNKYNDMKMKDLYIGKVAEHLNSVQVLSTHDNKVREEMAKDIRSLVQSSKYEQKSTVSGSEVYVNRKGSKVKELSSLKFVYMEG---------DMTTDDIKKL.. | 149 |
| 7 | -6.060 | PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013; | ali follow.. | 19 | 1 | MKRNYFFTMLAAVLLAVAGANAQESAEFRPAE------------------------------LAGI-YVSEIPDVPGILKPSNTFKVLSDDGRIVNFTMIPGKDAIITGTYQQLTDNSYKE......... | 97 |
| 8 | -5.290 | PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023; | ali follow.. | 13 | 9 | KRTSIFKALALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQTVEIR---ELKKTGDFANTLYTIRYFQFEGEGTLKMD------NGITFLPNDRYLLEEKFRLYYTAQGDEAHNFIVV.. | 129 |
| 9 | -5.040 | PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete) | ali follow.. | 12 | 1 | MKTKLVAVIALIFCAFMAEASKVEGNGN-------------------IITKEISVDNYSEIELGGNISNKKFPVFKYTHGRSASLKITIDENLFPLLSIKNNGRLAIR-RIKPTQYVIEGSSKTLKYLK. | 126 |
| 10 | -4.830 | PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621; | ali follow.. | 15 | 1 | MKYVKILFAMALVLTMCSAFSLKKGHSKTVYAFGIAASFTDTVVYFTDIQILDSAKVSKEGFLTHRDLYSYQLKNYV..................................................... | 77 |
FFAS is supported by the NIH grant R01-GM087218-01
|
|
|
Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83. |