current user: public

If you have questions about the server, please let us know.

Query: [S] COG3592 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst MEEETLLEQGYRKYRGADVDIYFNTNICAHSGNCVKGNAELFNLDRKPWIMPDNVPKEEAKRVIHTCPSGALQYIEKLast
1 -4.870PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  145YKGSGRPDKETKLYQAPFFNVWSQGKVCTGNAA............................................ 177
2 -3.910PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  25  1......................MDPPVCSPWGRCYLL---LF-----------------------ACPIIFASIMKK 31
3 -3.550PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  14  2..SETKERLCIYADFPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQK---TVINPLIPTSEQGCK......... 65
4 -1.840PB035451 Q3Z7G7_DEHE1/1-135 PB035451; Pfam-B_35451;  ali follow..  12  95.................................C--TQPVIFKIERIDIPENEEEREWLEKQNFKNTVDDAYT.... 135
5 -1.800PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  150LVNWKRAMDFLKMYAGENLPFFIDNAFAEEYKRFLLTAP...................................... 189
6 -1.740HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  13  73.............................SLGRGIGAVNSMIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQ.. 118
7 -1.680PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  1..........MKTLTFKYLKLFLLAVAMINLTSC--------EIEIDDFYDDDNIGGSYYNKSLDLC.......... 49
8 -1.440PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  16  115....KLAPVNAPYFDGAKLLIAAD---CTAYAYCPKLDSVDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKK 200
9 -1.420PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  9.....................................PPRRFPPVLLSGAVTLKRMPQPVTALLAAMITPAVLIS.. 46
10 -1.400PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  17  7.........................................................ELLDEAVDFCRKRGLEF... 23

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24