current user: public

If you have questions about the server, please let us know.

Query: [K] COG3888 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .
# Score Template Links and tools%idFirst MSLRDVLLRELKRARGLGIDQFQIEEMMGFSKSTVSEALKDLEEKGIIKRRTIGGKIKHVWLAEYYPYYDEKLLRIGCLRSTEYVKFVSVAKNYSESKGIDLIVRFYDDAISLMNDLSQGLLEFALAPIFTEIIYSISNRNSIILGAVASGGSGVYKNVNCNCGKILTSESSSMMILAREFAKTRKISEIAIFKDPRRAIKDYESFKAEYIVIWEPYASKIMGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLYKRSRFTAREDVIDIFAKSTSVSPKTAKASLENYIWDIKFYRSDLKKYLEFIGYPPIEEIIEKIYEEVLast
1 -6.050PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  20PDLKTAMLGRIRADEPRKVTPSDFVDL---SRDAVDKTLQRLTKAEALRRIDRG--QPGFNKLTQKPNPPDPRSVIDAVGRRDQTRMLVDGMTAANDLGLTDA-----------------------VPAKIVVHTDARRRAIKL------GNATITFRPTAASKLFWAGRPAMRVVQALHWLRDLLVRDGESEQIQRKLAKLFEDPAVGPPLKAD--------------------------LAAGMTALPTWMLVFLKPLIETDPDDRGQHPDNVHAAAD............................................... 244
2 -3.220HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  2.............QTNYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLLMKHRDIDFHI-YSSPLNLTDSFQAMARLAENPSIK-RIECANLLHTAEACIEWHQMDMIHIREGSRYDGYFEKVAQRISEIMTDEIRETI----LRLKYETPETEKIIGVEYYQAVIRDGVR------DYSGFKEWRKQHPVTGVVEWMP............................................................................................................... 203
3 -2.800HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  20....DKIEDFLDDTRYGDSVDAEFSSRWVYPEEEIKKLVESLEDKDKVYIKILTYEFEDEYVSFRIFSQGEWKVKL........................................................................................................................................................................................................................................................... 97
4 -1.920HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  10.......................................................................SNLTIGYTLPIRNNKYMKSLRVYVSGNNL-FCITGYSGLDPELDISNVQAPGVEYRDTYPTTRSFTFGVNIGF....................................................................................................................................................................................... 81
5 -1.900HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  26  56..................IGVKGLAGFLGTSVSTVNRWKAC.............................................................................................................................................................................................................................................................................................. 78
6 -1.370PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  40..............................................................ACEEQLEDGNLVCLGAAGGY---ITVALDQPIKNGKGSDIRI--LGNAFYSANDPKYGDATIGGSVEPGIVYVGVGSSPETAEWYELAGSEYYTTEMHRFEITYYKPTVETGEIKTPYITIDNYIRWTASWTNPDGSKQTAEGWPKNVYHKQSYWPAWEENDQITFRGARLPDNAVNYGGDGSDPDNPQYWVSYRYAADSYGYADAAPNSDNVYTTFDLDWAVDSDG-------NPKHLDHADFIRIQSGVLQQCGWTGETSTEV 293
7 -1.350PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  17.................................................................................................................................................................................GKWMFQVMGLEYDKALKLAEELPEQFFPETATGLCWHEIKWG---------------------LPVQENLSYQERRQAIYEKRDYHSPMTPYIMERYLENATGFTVH-IADCHDAGPLKYKPPHPNVFKAFFNGDGTLDSKKVRKLIDKL 145
8 -1.170PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  13  79ITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSS-----------------------------KTLKYLKTSGPMD-----FEAQNAFSEDQLEIKIS-------------SSDVKFPHNVKLRLGEFSV-------------SGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYS........................................................................................................................................... 207
9 -1.160PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  29....................................................................KGVFLLRIAVVDGQGGGIGKHITARLRQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPR-------VEAITGSLAIILADAMLGELTPAMAAAIAASPARKFLLPINRSGVEVIGVTPEPLPHLIEALVNRV.................................................................................................................... 164
10 -1.080HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  12....................................................................................................NYAIDELGLSAQAARNLYAGKANAQVVNYLPRFLDLTYILEQYFNDTVAAGYAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSVYQADLV--LAVKEVKKEIGNDFAAMQSMTAEAAKRMFTEVAKGQD-------MTNPTITPEQVSDLIYRSVAGLDGCHRDALNTLGQALTGFFQNHLRAAQYRRKAMKRQDNEQLCALAQ.................. 221

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.