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Query: [R] COG4624 Iron only hydrogenase large subunit, C-terminal domain, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDALIRPPMSFFADLPKDNKKCIKIGSPLALSLSDCLACSGCVSADEAGALSEDLSFVLDLSPQTSFVLSPQSKINIFNLYREDGMEYREFEAVLSSFLRSKFNIHRIVDTSYLRSKIYEETYREYMATNHLIVSACPGVVTYIERTAPYLIGYLSRVKSPQQMAFSLVKGSRTVSVMPCQDKKLENGRDGVKFDFILTTRGFCKALDSLGFRRPARASGKSLCSMEEAETTQWNIGTSSGGYAEFILGKHCVVETREIRNGIKEHLLDDGRTISQITGLENSINYFKSSKTKGPRHKMTEIFLCKNGCIGGPGQERVNDVEMDIREYDRNGREQPRIFYSSPGLEEKRVFREVKAKRVDLRVDWLast
1 -5.890PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  18  37..................STQYNDLFSYAIKRLERC-ACKHCPIHCYQPARREAIKAIMRWSGPRMLLRHP...................................................................................................................................................................................................................................................................................................... 95
2 -4.480HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  14  53WAELNNAPILPEHINCQGCRVCIRQCALEK-GVATCGDCLDCPTVGEILENNPSALKNLKG................................................................................................................................................................................................................................................................................................................ 127
3 -3.150PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  7  2.......AITFVEREAAAYDEVMANKQARLDAEKSINMVGSGVMHCPGSMARSIFRRPAAASGEAVQASSYEQAAVECVQNTTDKTVNQQAGDIYNYERPSQLTQWPVAKLLIAADCTAYAYASFHEKKGHVTLIGCP------KLDSVDYSEKLTEI-----IRRNDIQSVTIVRMVPCAKKALQDSGKFIPWQVATISID................................................................................................................................................................... 219
4 -2.690PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]  ali follow..  8  27...................................................................................................................................................................................ICNKAVQDISEDLELNQNVSINKIFNILKASQASENTQNLRKKHAPIKVLINRKNFNLYQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFDTNESDKIKGDKNYYNSLENFEG----YSYKKIYKCD--C-----IYDNLREATKHENSHFQHDEEILFHSSDANTNKESLYELTENELKNIKKK. 206
5 -2.480HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  9  6........................................................................................................................RGEERMKEEDNILKKKVPE---YFENLTSEVMGKLPEKEGPAFEEVKQPMMWIRLYMAAMFNEAATEVVSDEYIDVALDDYSLSVYLSDATAE........................................................................................................................................................ 137
6 -2.460PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  10  1MSETKERLCIY-ADFPYEFAVC--------APRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQGCKAFADNTPVLFAHGITHLYDEL-HRLLTYFGKTTYYRIYRKERYITIQEQDYIRDVRAGFSSDLIRYDAMVYMY.......................................................................................................................................................................................................................... 148
7 -2.280HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  13  118............................................SSEASLAEWGQKIIEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPN--GLIIIIGPEKNRIRRFFKICLSPIFFWKSLQKITFRYGTCPC......................................................................................................................................................................................... 264
8 -2.210HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  10  19........................................................................................................LDEMYQDDYYPAFLVDKVKDELQKVIDLLESG-ETDTEVIQETLDEAVCGINDLQEEFDENDSEIETVARDCIGVTVAYILEWFGIPIDIEEAIRERD................................................................................................................................................................... 115
9 -2.210PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  18  16...................................................................................................................................LLLFACP--IIFASIMKKEFIGRTAKSLS---LALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVT...................................................................................................................................... 117
10 -2.090PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  8  52................................PRWSLGRNARLAETPGGRLAQVMEEAIRHWATVLSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPTLVVTDSQAIDVVHPWTLDRSSGRPLVPITT---SIAMAYQQNGGRLDPFVEGLEA----LETLQDGDRVLISEACNHNRITSACND--IGMVQIPNKLEAALGGKKLQIEHAFGREFPELESGGMDGLKLAIHCGGCMIDA--QKMQQRMKDLHEAGVPVTNYGVFFSWAAWPDA--LRRALEPWGVEPPVGTPATPAAAPATAASG..................................................... 330
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.