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Query: [S] COG5291 Predicted membrane protein, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSIPQMNNTFLLGQMLRVPPITRYMTLLISAVALLVYVDAVSPYSLYYSPLFLKRLEIWRVFTSFLYFGKPTLDMFMHVVFLYRYSRMLEEGCVNTSEYFWLILVISSVLFAISNIYGISALGTSFSATITYIWTKRNPRAIVQIFGFISFPAFYLPFILPGFMLLSRRSISIDDVLGIVVGHLFHYFKDVYPRWGRDILSTPCWVKKLFNEHPSSCCKARKGITIREGRERHERNMGYSNASTTSGDSMASLTDMADTKSSTENSAVTEESQCCAESFKDSSVVSSQKSMAVSTVVGSSTEAKNNYLDFTEALCDKEVVAEQNPESQSNEEWDEKWGDSDNESECSLast
1 -5.560HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  10  6...........LREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIE------NVMICGV----VAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEIL-----------------------HTFPIIYKRMKLRAGLGIIVISMIGKALGALYYFL............................................................................................................................................................... 151
2 -4.520PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;  ali follow..  5  69........................................................................................................................................................................................................................................................................................DENEIEVGKPIQCQVAVNHVVELTAEEKAEARQNAIRQYQDEEVRRLQNRNKPRTATKATVQEVQQPS 136
3 -4.390PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  8  88......................................................................................................................................................................................................................................NGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSDGKVADNA...... 199
4 -3.970PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  10  45............................................................................................................................................................................................................................................................GTKSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGE.. 138
5 -3.860PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  13  1.................................SIVYAIGGL----LMAVGTGLYAFFIIQDVACIVMLIGAICFATMQMRQQYL-GTNLTIRRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYHNWVVILLIATALEVYTLHRI........................................................................................................................................................................................... 123
6 -3.410PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  14  1......MNEGIPEQLIRRLSDASRLVPLALLAVVAA----------VIYVWRPLFHGLIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIP.................................................................................................................................................................................................................................... 104
7 -3.310PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  12  45............................................................................................................................................................................................................................................................DSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGE.. 138
8 -3.240PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  14  122..........................................................................................................................................................................................................................................................................................................................ERDFEKSSLRKQIKDLTEKNVIESTNAKEHSEIE 155
9 -3.220PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  18  19LHDKRKRLVERLKGYLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAY............................................................................................................................................................................................................................................................................................................ 66
10 -3.040HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  6  2..............................................................................................................................................................................................................................................AVQRNTSGARTARGAGTGANGPSGGPSQNNRSGKPRKRRISKKQQAIYRRRRIVAGTVLLLIIALIVFCVYSLGRGIGAVNSMIHHDEVYAISRDATPAPKKVSNVKDCS 111
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.