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Query: [S] COG5572 Predicted integral membrane protein, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRGHDGYIVSSSPETGGLRGGEILFADHCNLGHPRNELSHDRAAQGRLGANPPGESLMTRTATTAALAAAIALSAGVSIAAADEHKAGAQTEKCYGVSKAGENDCKAGAGTSCAGTSKVDYQGDAWKMVKKGTCVTIKTPKGMGSLTPKALast
1 -5.770PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  22  1MEGHE------EVRTGWSRWDSLLF--YCNFLKGVFLLRIAVVDGQGGGIGKHITARLRQELPPEVEILALGTNAAATVA----------------MIKAGANEGATGERAIIYNAPRVE--------AITGSLAIILADAMLGELTPA. 121
2 -4.350PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  17  50.......LAPAEIPNDGCKGHPVFLAQHATGTCCRGCIEHRIEAGKSLSQEEQ................................................................................................. 101
3 -4.000PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  9  83..GLDCYKVGPTLGGGTTAGDTIVYPY--------CYATQEILDNGPLRFTVKLVVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHEPDG.............................................. 183
4 -3.390PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  12  145....NGFTILEFMYCIGIIIGILTFFNH-RLSVDPTPMEVEMRLYENDIQTTLVETYSRKE......................................................................................... 204
5 -3.230PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  10  29.....SWAATSKPPSGNL----------------PKSGETRKQPTIKNEFINEKRKMRMNLPKVKMLQVSKCLIGLAVMMLQSCDVADNLRDMLCGNWESVEGK.............................................. 111
6 -3.050PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  14  114.......IKLAPVNAPYFDGAKLLIAADCTAYAYASFHEKFIKGHVTLIGCPKLDSVDYSEKLTEIIRRNDIQSVTIVRMEVP----------CGGLEMAAKK............................................... 200
7 -3.030PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  7  229....EEIIVKVLESIDEYNEGKTQ--GIC---------GSGYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHER.............................................................. 304
8 -2.820PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  14  121...NNGMIITG-------RSETVTYAKPVKDGKSNYSLSVEELQALQRAKENTIDTLELQGF........................................................................................ 175
9 -2.740HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  9  2LKENQGYVIRRTILFD--NQCGFALGENSRAPNP.................................................................................................................... 33
10 -2.550HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  9  21........................MIAYCGLDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQC--ALEKGVATCG-----DCLDLE---------------RCPTVG............ 112
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.