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Query: [E] KOG0068 D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAFSSSCSSVKAVNSRWTSPSPSPSSRFAVLPAFLHRRYATSVKLTAISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTLPKPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKDSRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKGELSATAVNAPMVAPEVLSELTPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSARDRDDLDTRLLRAMITKGIIEPISDSYVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVFLKLLast
1 -2.940HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  17  9.................................................................................................................DELLERIRD-----IRASEKVAQSFFKSVQNKLEIAKRADASKDNMGLTSFKGVKVVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLRFNGREV-LENFGTVKREVAEKLA--------YEQYDTHRRALEAADDVDELTADVKRLK........................................................................................................................................................................................................................................................................................................................................................... 199
2 -2.580PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  11  19......................................................................................................................................................ETGERAFGYDIWTKYNTTEPVVEARYEGELNPDMKAKIAELG-KTDPKAAQELYRSVSYHVDHGNGLDCYGPTLGGGTTA-AGDTIVYPYCYATQEILDNGPYNPLVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHEPDGAIVADAANGYMDNGKIFVGAAFPTLVKEAKAVLFPEKEKKELRGGADGHVLAI-YWGAAWSKADIKDSAAWNAYMADFAQKVRNPLTV....................................................................................................................................................................................................................................... 292
3 -2.070HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  10  1...............................................................................................................................MKEHKEVSALLQQAKQERRCCYGTS--DAQRRALKRRLHAGELVADRTLWNTMTREQQSLQVIRALSAIHPQW------------------FAGLSAACVGLQHNYSLHDGTV------------HIASKSGIGGGDEARLNRIYINRIPTRKHNILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVNPLSENGGESLMRGQITELSFGSSCWQCSS................................................................................................................................................................................................................................................................... 223
4 -1.910HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  14  1.....................................................................................................................................................................................................................................................................................MIYLHARGLFHVLLLICNRELLLI-----------GKRKDEDDMAKSTKTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKAEESKKRTHRLCQ-----------GGAVESVLGCP-IEEEDLPKLIGFLKRQETNGKFFSKAMQKELVTDMEEV............................................................................................................................................................................................. 136
5 -1.870PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  9  15...........................................................................................................................................................IEKKNLRTDDGLRLEILSPGWWNNEEGPDFKHAEFFLEGKGLIRGSVEIFASDWIHHKHENQKTYDAVLHVVMWNDLKGRCVKNFSGKVIPQITLSLYLEAELDEI--IETIDVGSYIGNKQVIPGYCNLEMWIGGFLDYAGDERILQKAKKYEKWIENKPFERVLYEAIMESLGYKNNKKPFQEKKIIAQSLLLGMAGLLPLNEEETKRFDDETIQYFDRIFSTWQGIKPKIHQTPLTRES----SYTGIRPANFPDRRIVAIANILSEHLDNGLFRYILRIFQKRDDTKKNTRGFKSFVNEFLSPFLETHDAYWSYRYTPGGKKLNKPQKLLGKERTSNIFVNVI.......................................................................................................................... 389
6 -1.700HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  13  12..................................................................................PLMFFDRAVNAQRSQLLTVMADAVSECRTAADQAAELNETGQVGLLRLAEVWSAIRAKEGMGGLILEGTEAKILSDVVAQFYAYLSGCMFNDPVG-------------MAIYAELHYMMSSLMLGEW............................................................................................................................................................................................................................................................................................................................................................................................................................... 125
7 -1.590PB001565 Q6LS01_PHOPR/1-384 PB001565; Pfam-B_1565;  ali follow..  14  68......................................................................................ITPVLEQYGFASFEEALEYCKERNVNPYDIVKETQPI-AIALKEDAKNAAEAAEYIGQGLQAF-QVGLGHGRLAARLLNNDTQCFCFLAGHESYAAAEGAIKIAMNANK-----------------------VRHHPLRVIGLGKDAAYMIARINGFELDVVSERRFSTSQRGDINCYGADDVREGVAIMHREEVDISITGNSTNVAGTYKKERLEANQAYFSVASGGGTGRTLHPDNVAAGPASYGMTDTMGSSSVPAHVEMMGLIGMGNNPMVGATVAVA................................................................................................................................................................................................................................................................ 378
8 -1.440HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  11  11........................................................................................................................................................................LSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMICGYNLGFANMPKVPVSNICGNIIIAIYGLCVGIF-------------VGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMAIGKA................................................................................................................................................................................................................................................................................................................................... 143
9 -1.390HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  18  2........................................................................................................................................................................................................................FSLLLSTFAMMGL--IGFFVAGVIKLIASAADSLAFYSSHQE------ELARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGV------TKHPGDNRGFYHGVSPGESERGLMDYFYPE........................................................................................................................................................................................................................................................................................... 115
10 -1.370PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  14  126...............................................................................................................LQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAP................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 189
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 7 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24