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Query: [S] KOG0858 Predicted membrane protein, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDAGVWYRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQLWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYLLIVSAVLANIGGMIFNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVLAAFEFIFHFSLASLVGIFVGHVYYFFKFQYSQDLGGTPLLETPQFLKRLVPDVSGGFGGFGLPPESRAPPRQATESPWGRGMTLGRNLast
1 -5.060PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  13  1MN-EQLIRRLSDASR-LVPLALLAVVAAVIYVWRPLFHGLIYRVAYSPSLLILVGTTV-------------VAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDFPTVNE------NPRIVPEAVA---------NVQTKGSVSYRQHELGASDIARTEDGRLAWSYPIQPGPFQVRLSGHQRGVLLSDMTAMEDREEHEFARGQAMLFHRS 225
2 -4.310PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  9  19...........................................................................................................................TVGLMIALYEKRHPETDA---------NDLFSYAIKRLERCHFGEDKPACKHCPIHCY--IKAIM-RWSGPRMLLRHPLAIRHLIDDHRPVPDYPKRETSAKTSTGRTARLATQRATSADSD 140
3 -3.710PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  7  30..LKGYLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGRNDGSRMETGHA............................................................................................................................................................................................... 81
4 -3.650HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  18  151CSQLFKIRPLPTQARWILLALWLISFILCGVYIHQSGMLYDWHNYWNGVHDWN................................................................................................................................................................................................ 203
5 -3.490PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  14  1MD--------PPVCSPW-------------GRFGCYLLLFACPIIFASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELER......................................................................................................................................................... 71
6 -2.710PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  13  121............VKSLCYFVMVVLLITVLVLSFKLIARFRNSENIFLMRNLKLIIMAFSILAYYIIWWGITLVEVYFIQQSFSLAGQPIDIAGSLDFPNGLFEIPFIFIIYEIF................................................................................................................................... 223
7 -2.550PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  7  1............MKRNYFFTMLAAVLLAVAGANAQESAEFRPAELA----IWQLCH............................................................................................................................................................................................. 41
8 -2.540HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  5  53....QFIIGVKGLAGFLGTSVSTVNRWKACGLLDDATLQCGKVVIFELPKVIEILRV............................................................................................................................................................................................ 105
9 -2.430PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  7  10......FSKIRSRSCPFMQQNKFRKAIVAILMP--------------------MILVVSFGNCFGKFAIVKKVYEVNDGFNIGSGLLAKFIKT-----------LVMYFPFSILYFVGFFFDLILFNLIEFWSGNNP............................................................................................................ 109
10 -2.350PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  11  5.SVPKSIWRTPPRKR--------------------------------RFTVWRRSWAATSKPPSGNLPKSGETRKQPTIKNEFINEKRKMRMNLPKVKMLQVSKCLIGLAVMMLQSCDVADNLR--MLCGNWESVEGKPDVLIY..................................................................................................... 117
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.