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Query: [PET] KOG1054 Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQHIFAFFCTGFLGAVVGANFPNNIQIGGLFPNQQSQEHAAFRFALSQLTEPPKLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALISIIDHYKWQKFVYIYDADRGLSVLQKVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIIKLEKNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYTDTIPAKIMQQWKNSDARDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDSIRKIGYWNEDDKFVPAATDAQAGGDNSSVQNRTYIVTTILEDPYVMLKKNANQFEGNDRYEGYCVELAAEIAKHVGYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEEFEEGRDQTTSDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYKSRSESKRMKGFCLIPQQSINEAIRTSTLPRNSGAGASSGGSGENGRVVSHDFPKSMQSIPCMSHSSGMPLGATGLLast
1 -3.520HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  13  18.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AITCLMATTAFAAGTGDVAGAVESTWSTASTQIKSVVDNVVFPAIDLILAVFFFAKLGTAYFEYRKQFEWAAPAILFA--------VFTLTAPM---LWSIIGI......................................................................................................................................................................................................................................................................................................................................................................... 115
2 -3.470PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  13  144...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AFPINLIEGFSNFLFCIVVAPNLVKILNKNLPNLWGEKFTFTFKEIKFKKINFFSFISIFALTITFAYNSTFLNLAQIV--INTIRPNPNPNPNEIFNFDLNNLPIENGLLTVEAIWF-----LQSKMELTDTA-------------TVIII-----NNTAYVNINKNSVKHNNVNYLKSEENNWY--LLGLFVEKFFKDDVEVFSPKIPALYFVVNNSTKNIFSSVGISSLSTNNPKLIF.............................................................................................................................................................................................. 372
3 -3.010PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  12  46...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KAVTFENLQGTWMY-LQLEGDNALKNVAGSLAATEAEKKMKEYCA-------KVGIVEGVFNYVFNSDSTFTSA------------------------KRGSLKGTYSVSPEDKTVRYTVGNKKLTVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKAINK------------------------ASEYDGMML............................................................................................... 201
4 -2.820PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  15  30......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LKGYLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGRNDGSRMETGHAGRVELPTP........................................................................................................................................................................................................................................................ 89
5 -2.530HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  8  1............................................................................................................................................................................................................................................................................................................................................................................................................................................LVGVFCVEGFSVDVFIVHIREICFPVLFFCHFSVSDTFANKAASGGNVVSENTIAVHEQTDAYIAMPQLPYLPDAELAGMGGQLHSLTYSRIQRISTTEYIFSLKDWIDKL............................................................................................................................................................................................................................................................................................................................................................................... 111
6 -2.320HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  9  31..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDPCE---------------------AASRVARANGAEVTTCSVTGEDVVVEVSVEARVLGVSRPAVSSARAG------------PVDDP....................................................................................................................................................... 142
7 -2.100PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  11  57..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YLILRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKY-------KIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNSGWRAFWYDTTA------------GLFDIELKSE------PVNNREDFLIEDILQRSFQRNILDEASSKW.............................................................................................................................. 209
8 -2.020PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  10  7.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LSIRLACACYILYKVCGQKKKIREICDLLYTKLPPVKEKGESGIMGSTCFVYLDEDAGKSVA-FIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVS-PDDLDNAGNVLFKLN-KSLRAALTLHT--------RETDLFEIFSSQV---ENKNVIDSLMGKYLDGNGNPLSVRKTKSVVPVSDGWKQY.................................................................................................... 223
9 -1.820PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  6  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LQEEVNQKVISLSIQGVKITASVLKAAVRKFLEMDNRRKQKATQVKMAEKTGRAQEKGREKARKKIEKKKPHG-KQTIKQLNAQGV------QLSNIKITDE----NIKSFDRVARKYGIDYSLKKEVGADPPKYLVFFKAKDVDVMTAAFREYAGVELKKKQVKKPSVRKKLQ.......................................................................................................... 163
10 -1.810PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  19  114.................................................................................................................................................................................................................................................................................................................................................................................................................................................MYQGFSSDLMMLMGNLMQWKFRMPAIFKKALRSMTEKT---HDVCTKTVWKADDVHKTAAAVRQYKER-LGFSEQWMSYNIVLLAKKEPKHKDE........................................................................................................................................................................................................................................................................................................................................................................................... 207
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.