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Query: [F] KOG1567 Ribonucleotide reductase, beta subunit, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADFLast
1 -3.980HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  1......................................................................................................................................................................................MFSLLLSTFAMMGLTFVIGFF----------VAGVIKLIASAADSLAFYSSHQEELARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSRGVTKHDNRGFYHGVSPGESERGLMDYFYPEDTRTMFLRKEEQMLQHDKKNNKTSSTNK.................. 143
2 -2.290PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  10  1...........................................................................................................................METIKFNSEAHELFYKEMLARTNQTDVYYKAFFYCMGICETTRKHIEDLFDFKEGTGTSYKVTRMAYNLWNG---TESLTTPSSLFACEYAAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHSEIE....................................................................................... 155
3 -2.190PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;  ali follow..  13  1..........................................................MAMHTWFECKIRYEKVMENGMQKKVTEPYLVDAL---FTEAEARIIEEMTPFISGEFTVSDIKRYSELFPSDEESADRWFKCKLIFITLDEKS........................................................................................................................................................................................................ 93
4 -2.160PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;  ali follow..  1...........................................................................................................................................................................................................................MAKIQIKSEQITPFGGIFCVMEEFDALLSNIIDSTLGRTKTFGYQYSEIFRSLMCVYFCGGSCVEDISTHLMSHLSFHPVLRSCSADTILRAIKELTVPNITYTSSVSGKSYDFNMADR............. 120
5 -1.960PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  10..............................................................................RNIEVAKKSVTLGDVLKIECVNPAMLARIRSTFHHPDNKRERRVVMSVLKVIQKIHEIYPEASVENIGETD---------------------FIVTYEEQDGKGGVIHVAKIVMVVMISFFGAAFSTMAFNNDVGVTKMFGQIYELLTGTKSNLTFFNHFGKKRLSVDPTPMEVEMRLYENDIQTTLVET................................................................................... 199
6 -1.930PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  13  80...............................................HQPGLGEVYISTGSLYLCTTALGLPASDDFWSQPDAP........................................................................................................................................................................................................................................................................... 119
7 -1.880PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  14  202...................................................................................................................................................................................................LSFISIFALTITFAYNSTFLNLAQIVRINT-NEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVII--INNTAYVNINKNSVKNYLKYLTGRDFPLLGL-EVFSPKIPALYF-VVNNSTKNIFSSVGISSLSTNNPK------TFTFDNGF 380
8 -1.790PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  61............VPYDRHKPPVAPEKRPPWEEVVRRDRAGEIEWKDVY-----QPFGPSWSTTWFKVELDIPES--------SSSGEQLVFEWDCENEGIVIDGDTLLPKTAFSGNGERTEYLLPLGRSSVSFYIECGNNGMFGVGRNNNSI----NPPDDDRYFHLQKADLVWPNWQARALYIDFWMLGDAAREL----------SWQKHRARELGNLVMNMFDPEDVSTVDKCRKFLQKEFFDKYTDDPK................................................................................................... 279
9 -1.780PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  10  16.TPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAG---------------KLHGEYQGSGFTEPKYIARRGDGQVVQLSRLLHLVASSVDGSRDIET--IAHRVSGRFGREVSADNVRYLIEQKLDPLGV----------TVPEGREEEDISAPRSDLLLALKGHRVIFNERRVATIAGALAWLHRPVVVLAVLAGIAVLDVWLFAFFGAITPVLEVL.................................................................................................................................. 209
10 -1.710PB000716 Q60CS7_METCA/1-294 PB000716; Pfam-B_716;  ali follow..  20  25............................................................AEYWSARELQPLLGYSQWRRFEQAIERAIT..................................................................................................................................................................................................................................................................... 54

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.