current user: public
If you have questions about the server, please let us know.

Query: [S] KOG2632 Rhomboid family proteins, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410
# Score Template Links and tools%idFirst MRPNIVTEAGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIISRFQVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMLIVTHPVSMSSSSLASLGDPSSLCVLAGILPAIFPLILHKTQHPGNAWRSLSSWLPQREASNQSSEDSRFPGRGRTLSTARDPTAPAGETDPNLHARLLEDSSSPDRLSDATVNTVADSRQAPIANAAVLPQSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQQVLast
1 -4.830PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  16  44.......................................................................................................................................................................................................................................................................................LGTKSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEPGKGQASGSAFEDIDMAVSPSEAEMRHAGKVMTELD. 187
2 -4.760PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  13  44.......................................................................................................................................................................................................................................................................................LDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPED----EEPDKKQASGSSFEDIDMAVHTIWKESP 171
3 -4.430PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  8  17..................................................................................................................................................................................................................................................................................................................................................SAFANNANDTINVAGKWDGTINKAKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVNTLTEKQ. 100
4 -4.310PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  12  70..................................................................................................................................................................................................................................................................................................VTAADTVRNNANEYNALLNGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVVESKAAKRLDDAKTNLTAKLDEASKLLADSD. 192
5 -4.070HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  12  1.............................................................................................................................................................................................................................................................MAVQRNTSGARTARGAGTGANGPSGGPSQNNRSGKPRKRRISKKQQAIYRRRRIVAGTVLLLIIALIVFCVYSLGRGIGAVNSMIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQLSAASQSVPVG---GSLDFTATIVHSDSGRVLTITSGQE. 164
6 -4.060PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  10  23..................................................................................................................................................................................................................................................................................................AQNEENKERKQRPTPEQMMQMQTNQMVRALMLDDATAAKFEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLDIREK---YNEFSKILSQKQI 145
7 -3.990PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)  ali follow..  16  10..............................................................................................................................................................................................................................................................................................................................................................GEKTTTNKMTMTVMESSVRFSKGVTEALVKLLVNDKQKKIAVQACDAXDENAIKFCKTKR. 74
8 -3.910PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  11  49.............................................................................................................................................................................................................................................................................................................................SSEPSQEPAADQPAASQKATSESTVQSGEGEKEVFKPASDDKPKESIQDYEQEYENQLKDILETGVEDVSIVVNVD-ATSLKIFEKNRKTQETS 143
9 -3.540PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  8  184.................................................................................................................................................................................................................................................................................................ASDKTEASSENTIIEETASETPLELETTIPSIEVDQDPERARRLELIDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVVEQKFSKAQAYRILSLKYPEKSGADQI---RAI 307
10 -3.410PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  5  42................................................................................................................................................................................................................................................................................................VKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTPDDLDNAGNKDEEKSLRAALTLHTIR. 172
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.