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Query: [R] KOG3263 Nucleic acid binding protein, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSSRSGEHRRNYAQGRNYESSRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRYERHRESVREESPRRPVEHERNWQPELKHGRERFRERDYEGRRDRKERRDGVSPFSPEGEGLERKREHEKLQAPSPKEEEERPVDQGDKMDGVKEDKDGSLEVGKSHDAMTRTKSAEEEIVEQEDEATAEMKRIMGFSGFDTTTGKKHGDVGQVYKQKKTKYRQYMNRPGGFNRPLDNELast
1 -3.300PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  10  97..................................................................................................................................................................................VTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKK----RP.... 154
2 -3.270PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  5  36.............................................................................................................................................................................TAGVRSADIEAKIRNDKNYANSEEYKKLMQERDESEAWARAATISFKADLNAEPATFVNQKTGKPAKVWIR 106
3 -2.530PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  9  1.......................................................................................................................................................................................................MAITSAPPVTTPAPTAQSVAADAAMSRFETQTSRYGSLTMTAG.. 43
4 -2.440PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  9  88................................................................................................................................................................DSIPQPKKMNPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQG......... 162
5 -2.330HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  1  8.................................................................................................................................................................................PMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLADVFVLVIGFI... 71
6 -2.220HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  14  7..............................................................................................................................................................................................................SHQLKKLNNSSSLTKKNMTMEENTVHP........... 33
7 -2.110PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;  ali follow..  11  278...........................................................................................................................DPMEEEQERQRRLREQERAAQNLRRAELVAAAATPLSFSEEGVNRFNIARAPGEVSNLGNALMTVSALRGMGYQDATVRNVFDLTDEGVAAQVVAAFVNLMTDHTNYVLRTYGVN--IHQE 396
8 -1.570PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  9  110...................................................................RKHQSSRLVNVPKLKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTIKA......................................................................................................... 181
9 -1.510HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  10  2...................................................................................................................................................................................................................SKKKRGEERMKEEDNILKKVGKKNSFKVP.... 30
10 -1.300PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  22  6..............................................................................................................................................................................................................................PLEAMEYEINK--GAGNPLE.. 23
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.