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Query: [DL] KOG3999 Checkpoint 9-1-1 complex, HUS1 component, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRFKTRISNLYTLTRLVQALDKIGRFCWLRLMPETVNFVIVPDFRMTQVWSVLEVETIFEDYVVQSNADNVINLEVPIDNFYKALRSAANASDSTVRLSKKNNQPLLSLSTTWSGRAFGSNIVTHNIPVRVLSQSYVSVIKEPTAPEPDCHIFLPQLNFLRHVVDKYKSLSDRIIMSANMSGELQLSVNIPSARVSTKWKGLENPELDPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRVIACFCEGHALVLYVYITDPEDEHTAVLTYYISTYVDLast
1 -4.320PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  66............................................................VFKYTHGRSASLKITID-ENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFLVFADLDCKNLTSKVSGSGDITLKGKADEARYSV.......................................................................................... 208
2 -4.080PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  41LTFTAMQGEVVATPQTRVSDYDDTDGKH---GGEVIGVKIGTDSNIPAYWQSTASQTVYGWYDISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKVIPQGDKTYLATRKVGDYYTAMLAPDTKTSNNFVKLTYYYNPDIELVKGTVYTYTVNKVDIPYEIIDNNGNSVSGFENISKDISISGTHIPGLTITGTCTVTMN..................................................... 308
3 -3.600PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256  ali follow..  11  18.KYRLVVLNEETFEEKVS----------FKLSRFNVFVVGT----TIVLVAFTSLREYIPGYASTDLRRQAVSLAEATDSLSQIISY........................................................................................................................................................................................................ 98
4 -2.940PB014120 _Gut.Meta.Jp.0147711_ gi|163636126|dbj|BABG01000147.1||5 (+ 2345:3428~0 complete)  ali follow..  11  227.KFEMSLANLYVKDDFMFFVFDIKNFSNIDYDVDFIKCFLRDQKKVKNSIQQ-PVEQKDFDKKILGKSQNRFVLAFNKFTI-------PDDKVFEIEMFERGGGRHMKLSILNE............................................................................................................................................................................. 336
5 -2.810PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  155........DQKKFEKDLGAAIDEFNEANSSYDEQAGKFTVEKARSNEKLNREHVIKYAELEL---ASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGKVD-----GSSVLQWISFADPANPTLDTSQISSWAAELANGFNTVGSTRWWGKQCAVEGGDFG-WSIDSSSLAKQVEDAINNKQTGEIE............................................................................... 356
6 -2.450PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  1MKLLLSPLLCQAQKNLFNKYNDMKGVSSVYISKAMMELNPNLFMKDLYIGKVAEHLNSVQVLSTHDNKVKDIRSLVQSSKYELLMKQKSTVSGSEVYVNRKGSKVKELIMVMNGASSLKFVYMEGDMTTDDIKK......................................................................................................................................................... 148
7 -2.420PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;  ali follow..  17  48.KYRMVILNEDTFEERVS----------LKLTRLNVFILVT----TTVLIAFTPLKEYIPGYSSTSLKLKATELTYKTDSLETALAI........................................................................................................................................................................................................ 128
8 -2.340PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  5AKVSLEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGF-------------FAEAMGHVRTQEEITLILNDNL-----KDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTAS......................................................................................... 186
9 -2.330PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  11  68.SFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQAMVQIASNSPYPGPNGLGGITVQGSASNVQVKQENNGNVYLSMSVQGIFISLVLYSGTNNAMVTVDPNFSGNNLTMN................................................................................................................................................................................. 180
10 -2.250PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  1MKIKFLSFIASFFMVSFVITSCLDDDNNIEYSPDTIHAFALDTAGLGSYKFTI------DQLSREIYNEDSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKVW................................................................................................................................................................... 119

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.