current user: public
If you have questions about the server, please let us know.

Query: [S] KOG4102 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .
# Score Template Links and tools%idFirst MDSNCDLSMVNGQTEPKDPKWASSSTQITSRASETFSGVGSAISTETSLQPVAAPTMYCLRLAQQRPITERHVHFHAGVIDNEHMNRRKSKCCCIYRKPHPFGESSSSTDDECEHCFGHPEVRTRNRLEKQRIQEQQNGCSCCHHHHRLHSNRNNRPPTEEIAQHKDDLAKEEPKSVVNNESSLKLLNEENVKSSKPRFRRQRKAEENPLRKCSSVLVTQRAENRKKNLast
1 -4.190PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  8  97.......................................................................................................................................................VTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKRP................... 154
2 -4.040HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  14  20.....TCLMATTAFAAGTGDVAGAVESTWSTASTQIKSVVDNVVFPAIDLILAVFFFAKLGTAYFEYRKSGQFEWAAPAI-----------ACLVF.................................................................................................................................... 101
3 -3.580HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  7  17.........................................LAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVM----CGVVAGNISSVLDTAYNLGFANMP........................................................................................................................ 80
4 -3.490PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  12  8.....................................................................................................................................................................................................KQRKPRSFDHKPIYYDQRRDELEKRIERIRR 38
5 -3.330PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  7  2......................................................................................NKRLNLYCTYAVSKDMVSGFTAGVRSADIEAKIRNDKNYANSEEYKKLMQERDESEAWARAATISFKADLNAEPATFVNQKTGKP......................................................... 100
6 -2.860HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  11  46FIETYTITLTKGFAGDSTSIFINDSLLVNRTMTEEPFILEVKRFAEQSALMIVNNATEKLSFELSEQGGEYRFEKEGEEVKPTGAGKKLSKECC...................................................................................................................................... 141
7 -2.710PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  12  110...........................................................................................................................................................RKHQSSRLVNVPKLKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTIK.. 180
8 -2.680PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  19  109.......................................................................DLSYSYALLDENNNGRSETV---TYAKPVKDGKSNYSLSVEELQALQRAKENTIDTLELQGFRSKKE.......................................................................................... 180
9 -2.610HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  7  17...................DRAVNAQRSQLLTVMADAVSECRTAADQAAELNETGQVGLLRLAEVWSAIRAKEGMGGLILEGTEAKILSDVVAQFY.................................................................................................................................... 93
10 -2.480PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  5  1......MTLLGDKTASPYDTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLKLHGEYQGSGFTEPKYIARRGDGQVLSRLLHLVASSVDGSRDIETIAHRVSGR.................................................................................................................... 108
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.