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Query: [R] KOG4520 Predicted coiled-coil protein, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFGSSRGGVRGGQDQFNWEDVKTDKQRENYLGNSLMAPVGRWQKGRDLTWYAKGRAPCAGPSREEELAAVREAEREALLAALGYKNVKKQPTGLSKEDFAEVCKREGGDPEEKGVDRLLGLGSASGSVGRVAMSREDKEAAKLGLSVFTHHRVESGGPGTSAASARRKPRAEDQTESSCESHRKSKKEKKKKKKRKHKKEKKKKDKEHRRPAEATSSPTSPERPRHHHHDSDSNSPCCKRRKRGHSGDRRSPSRRWHDRGSEALast
1 -4.390HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  20  29...AAGTGDVAGAVESTWSTASTQIKSDLILAVFFFAKLGTYRKSGQFEWAA................................................................................................................................................................................................................... 91
2 -3.530PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  9  69...............YEKNGQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKR................................................................................................................................................................... 153
3 -3.160PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  11  5...........................DNFL-DAMFAPYPASTRLTDA----KVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGA..................................................................................................................... 118
4 -2.540HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  23  36................TWQFNGQDGHRDYFWGH...................................................................................................................................................................................................................................... 52
5 -2.540PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  4  90.................................................................................................................................................................................IPQPKKMNPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQ.............. 161
6 -2.440PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  13  1MRVPRRSWPPRRFPPVLLSGAVTLKRMPQPVTALLATPATRVGRATDRVRGLTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTR.............................................................................................................................................................................. 106
7 -2.440HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  9  1..............TFVWPMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQ.................................................................................................................................................................................................. 58
8 -1.770PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  16  107..........GSDLSYSYALLDENNN-----GMIITGIYGR----SETVTYAKP-------KDGKSNYSLSVEELQALQRAKENTIDTLELQGFRSKK..................................................................................................................................................................... 179
9 -1.650HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  14  30VYMSMRLQQQKAENR-NFIETYTITLTKGFAGDSTSIEVKRFAEQSALMIVNNATEKLSLFELSEQGGEYRFEKEGEEVKPTGAGIKKLSKE........................................................................................................................................................................... 139
10 -1.630PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  6  93...........................................DGKSLFSFVRS-----RKHQSSRLVNVPKLKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTIKA.................................................................................................................................... 181
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.