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Query: [J] COG0012 Predicted GTPase, probable translation factor, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIDANVGVTYAIAEHPCKELGCKPNPQNYEYREGLALIPVKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPTENHDPIEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQRIKLESAIAEHLSGIGVTENDVWEAMHRLGLPSDPTLWSQEDLLAFASEIRRINKPMIIAANKADAASEEQINRLIKEGEKRGYIVVPTSAAAELTLRKAAKAGFIDYIPGSSEFKILKDMNERQKKALLMIKEKVLDRFGSTGVQEVINKAVFELLNLIPVYPVQDENKLTDQFGNVLPHVFLMKKGSNPRDLAFKVHTDLGRGFLYAINAKTKRRIGEDYELQFNDIIKIVAVTKLast
1 -5.810sp|Q9BX69|CARD6_HUMAN Caspase recruitment domain-containing protein 6 OS=Homo sapiens GN=CARD6 PE=1 SV=2  ali   13  13.....LGYCSFSKSRILNTLLSPAQLKLHKIFLHQDLPLLVLPRQISDGLVEITWCFPDSDDRKENPFFQKPVALANLRGNLESFWT------GFLMEVSSAVFFF................................................................................................................................................................................................................................................................................................... 109
2 -4.740sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3 PE=1 SV=3  ali   17  20............................................................................DLENLNLDTEDGKVVELDTLDNLETNDPNLDDLLRSGEFDIIAYTDPELDMGDKKSMFNEELDL................................................................................................................................................................................................................................................................. 83
3 -4.680sp|Q5VZB9|DMRTA_HUMAN Doublesex- and mab-3-related transcription factor A1 OS=Homo sapiens GN=DMRTA1 PE=2 SV=1  ali   19  1FSLAGIGFGTLGNKSAFSPLTTSASYGGDSSLYGVNPRVGILRLAYSSAGRGLSGFMSPYLT----------------PGLVPTLPFRPALDYAFSGMIRDSSYL.................................................................................................................................................................................................................................................................................................... 92
4 -4.610sp|Q9H8Y5|ANKZ1_HUMAN Ankyrin repeat and zinc finger domain-containing protein 1 OS=Homo sapiens GN=ANKZF1 PE=1 SV=1  ali   20  30....LLRAPRSGRSLFFGPLQRGDPRLWDIPLATRRPTFQELQ.................................................................................................................................................................................................................................................................................................................................................................. 72
5 -4.490tr|D6RIX7|D6RIX7_HUMAN Uncharacterized protein OS=Homo sapiens GN=USP46 PE=4 SV=1  ali   15  27....YFGLVNELSTELGPSVTEG...................................................................................................................................................................................................................................................................................................................................................................................... 45
6 -4.450sp|Q4G0U5|PCDP1_HUMAN Primary ciliary dyskinesia protein 1 OS=Homo sapiens GN=PCDP1 PE=1 SV=2  ali   7  6...ALAMSLDYDPLYVFNPNPGLFAVMHPLTYAETL---------IDYHLCSHPKYKFTKESRHGSSIPVTQKQFLHHTDIIPGIMHWKSFQSLVLSSLPDPSKM--ILDALPEEDRLETVERELCEQNVEVMLTPEMIKVEFPM............................................................................................................................................................................................................................................................ 156
7 -4.090sp|P52951|GBX2_HUMAN Homeobox protein GBX-2 OS=Homo sapiens GN=GBX2 PE=2 SV=3  ali   13  8.SLMMMQRP-LGSSTAFSIDSLIGSPPQPSPGHFVYTGYPMFMPYRPVVLPPPPPPPPALPQAALQPALPPAHPHHQIPSLPTGFCSSLAQGMALTSTLMAT....................................................................................................................................................................................................................................................................................................... 107
8 -4.000sp|A6NEN9|CX065_HUMAN Uncharacterized protein CXorf65 OS=Homo sapiens GN=CXorf65 PE=4 SV=1  ali   8  15...........................................VNTNCAVVVLLYYIRSKVKLPKTNT----IDLCEQTGKMKMLFLMKPNHAEYASKYLTARSTYYVCKVERGPPGTRLENAYRAFVPLLKNPEPWL----LVALRIQCDALERR................................................................................................................................................................................................................................................. 119
9 -3.850sp|P38435|VKGC_HUMAN Vitamin K-dependent gamma-carboxylase OS=Homo sapiens GN=GGCX PE=1 SV=2  ali   7  1...........................................................................................................................................................................................................................................................................................................................LLMDLSPWRAKLQEIKSSLDNHTEVVFIADFPGLHLENFVSEDLGNTSIQLLQGEVTVELVAEQKNQTLREGEKMQLPAGE. 81
10 -3.830tr|Q5T6C3|Q5T6C3_HUMAN Cytochrome b-561 domain containing 1 OS=Homo sapiens GN=CYB561D1 PE=2 SV=1  ali   14  4LEVGLVPAP-AGEPRLTRWLRRGSGILAHLVALGFTIFLTALS.................................................................................................................................................................................................................................................................................................................................................................. 45
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.