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Query: [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGLLast
1 -5.210sp|Q9UPR0|PLCL2_HUMAN Inactive phospholipase C-like protein 2 OS=Homo sapiens GN=PLCL2 PE=1 SV=2  ali   8  6....................................................................................................TVDEVFKNAQPPIRDATDLRENMQNAVVSFKELCGLSSVANL--MQCMLAVSPRFLGPDNTPLVVLNLSEQYPTMELQGIVPEVLKKIVTTYDMMIQSLKALIENAD--AVYEKIVHCQKAAMEFHEHLHSIGTKEGLKERKLQKVESFTWNITILKGQADLLKYAKNETLENLKQIHF........................................................................ 181
2 -4.430sp|Q9BZH6|WDR11_HUMAN WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1  ali   14  2...FCGIPVGVLQNKLPDLSLDNMIGQSAIAGEEHPRGSILREVHLKFLLTGLLSGLPA-FAIRMCPPLT......................................................................................................................................................................................................................................................................................... 69
3 -4.380tr|E9PDT7|E9PDT7_HUMAN Uncharacterized protein OS=Homo sapiens GN=AFAP1 PE=4 SV=1  ali   17  1.........................................................................................................YIDV-----------EMSASVIQTAKQTFCFMNRRVISANPYLGGTSNGYAHPSGTAL............................................................................................................................................................................................ 47
4 -4.330sp|O75923|DYSF_HUMAN Dysferlin OS=Homo sapiens GN=DYSF PE=1 SV=1  ali   18  1............FCQQHRVKAPVYRTDRVMFQDKEYSIEEIEAGRIPNPHLG-RLALHVLQQQGLVPEHV--------------ESRPLYSPLQPDIEQGKL-QMWVDL.................................................................................................................................................................................................................................................. 85
5 -4.270sp|P40126|TYRP2_HUMAN L-dopachrome tautomerase OS=Homo sapiens GN=DCT PE=1 SV=1  ali   18  19.....................PRLGAESANVCGSQQGRGQCTEVRADTRPWSGPYILRNQDDRELWPRKFF........................................................................................................................................................................................................................................................................................ 68
6 -4.140sp|Q8N344|MIER2_HUMAN Mesoderm induction early response protein 2 OS=Homo sapiens GN=MIER2 PE=2 SV=2  ali   19  6VDFALPKELPLISSHVDLSGDPEETVAPAQVALSVTEFGLI----------GIGDVNPFLAAHPTCP............................................................................................................................................................................................................................................................................................ 62
7 -4.100sp|Q9Y4F3|LKAP_HUMAN Limkain-b1 OS=Homo sapiens GN=LKAP PE=1 SV=5  ali   9  1.......................................IFEELEYHEPVCRQHCSNKDFSEHEFDPDSYKIPFVILSLKTFAPQVHSLLQTHEGTVPLLSFPDCYIAEFGDLEVVQENQG-GVPLEHFITCVPGVNIATAQNGIKVVKWI........................................................................................................................................................................................................ 111
8 -3.990sp|Q8WWI5|CTL1_HUMAN Choline transporter-like protein 1 OS=Homo sapiens GN=SLC44A1 PE=1 SV=1  ali   11  6.RLVSGYDSYGNICGQKNTKLEAIP----NSGMDHTQRKYVFFLDPCNLDLINRKIKSVALCVAACPRQELKTLSDVQKFAEINGSALCSYNLKPSEYTTSPKSSVLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEAL-VSDNSVLHRLISGVMT.................................................................................................................................................................................................. 159
9 -3.820sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3  ali   12  5LKIALAVDSFIYFANIRPNYKWGYCSNTVVYAYTRPDRPEYCVVFWDTKN--VKGLISITTCGDFC---ILATKADENHPQEENEMETFGATFVLVL--TPLDPKYIDIVPLFVAMTKTHVIAAS.................................................................................................................................................................................................................................. 134
10 -3.750tr|Q6L983|Q6L983_HUMAN Synphilin-1d protein OS=Homo sapiens GN=SNCAIP PE=2 SV=1  ali   17  1MEAPEYLDLDEIDFSDDISDNRSQ-------GNRLQKLGLEDTDREDAMGFGSHRAKLTVVAA--CPENEYSVTSLKTIPELCRR-VGVRTLDGERNRSHCRTELF..................................................................................................................................................................................................................................................... 113
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;