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Query: [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGGLast
1 -7.840tr|F8WDG3|F8WDG3_HUMAN Uncharacterized protein OS=Homo sapiens GN=C6orf25 PE=4 SV=1  ali   15  1..........................................NPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGRRPILWASSSGTPTVPPLQPFVGRL------------RSLDSAPDPAAGRWVGARTGSFGPGLVAAQAPAPATDSTT................................................................................................... 107
2 -6.570sp|Q9UGI8|TES_HUMAN Testin OS=Homo sapiens GN=TES PE=1 SV=1  ali   18  5............................................KEKCEGFELHFWRKICRNCKCGQEFEDTKYTTLIAKLKSDGIPMYKRNV....................................................................................................................................................................... 70
3 -4.850sp|Q86UK0|ABCAC_HUMAN ATP-binding cassette sub-family A member 12 OS=Homo sapiens GN=ABCA12 PE=1 SV=3  ali   22...................................................KTYLKDQHLSMLEYHVPVTAGGVANIFDLLETNKTALNITNFLVSQTTLEEVFIN.......................................................................................................................................................... 76
4 -4.550sp|Q8IWB6|TEX14_HUMAN Testis-expressed protein 14 OS=Homo sapiens GN=TEX14 PE=2 SV=2  ali   14  1.................................................GFSYDLLKKIDSPQRLVYS--PSWCGGLVQGNPNGSPNRLLKAGVISAQNIYSFGFGKAMPWFQFYLTGATQMAYLGSLPVIGEKEV............................................................................................................................ 85
5 -4.510sp|Q9NZU5|LMCD1_HUMAN LIM and cysteine-rich domains protein 1 OS=Homo sapiens GN=LMCD1 PE=1 SV=1  ali   13  7............................................KGTCSGFEPHSWRKICK----SCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTARVKGGDGIRIYKRN.................................................................................................................................................... 72
6 -4.420sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=3  ali   10  17...................................................GIQFKGQHLNLLEYHVPKRWGCLADLFKVIENNKTFLNIKHYSINQTTLEQVFIN.......................................................................................................................................................... 71
7 -4.290sp|Q7L0X2|F194A_HUMAN Protein FAM194A OS=Homo sapiens GN=FAM194A PE=2 SV=1  ali   12  3........................................SEDDSKRLKTISYQLSVDIPEKQIIDDIVFD-------FQLRNSNMSIICCDSRIACGKVVRNELLEKHYKHGSKFLT.............................................................................................................................................. 73
8 -4.240sp|Q86XT9|TM219_HUMAN Transmembrane protein 219 OS=Homo sapiens GN=TMEM219 PE=2 SV=1  ali   11.....................................................................IPQDWVSFLRSFGQLTLCPRNGTVTGKWRGSHVVGLLTTLNFGDG----PDRNKTRTFQATVLGSQMGLKGSSAGQLV................................................................................................................. 84
9 -4.220tr|E9PH34|E9PH34_HUMAN Uncharacterized protein OS=Homo sapiens GN=RUNX3 PE=4 SV=2  ali   21  1............................................................................LNPFSDPRQFDRSFPTLTLTESR-----FPDPRMHYPGAMSAAFPYSATPSGTSISSLSVAGMPATSR.................................................................................................................... 64
10 -4.180sp|Q5VXU9|CI084_HUMAN Uncharacterized protein C9orf84 OS=Homo sapiens GN=C9orf84 PE=2 SV=1  ali   2..................................PLTPLFLTCQHSSVNSLRTELQTFPLSPVCKINLLTAEESANEYYMMQLERCRSPLNPFLLTVPRIQEPHSQYSVTDLKKIFSVKEESLVINLEKAEWWKQAGLNLKMM-ETLEHLNTYLCHDNLSSNDTKIEIFLPTKVLQLESCLEHK............................................................................ 151

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.