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Query: [L] COG1039 Ribonuclease HIII, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNIVLKLETKERQQLAEKYKSYEQVSKNPYITFFAKVGKTSISVYTSGKVVFQGNEAEKLASDFGHIAQVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGNLSDKIAAQIIKSQGVDALNQLAKLHFANTQKAIKIAQLLast
1 -5.410sp|Q9BT04|FUZZY_HUMAN Protein fuzzy homolog OS=Homo sapiens GN=FUZ PE=2 SV=1  ali   20  7.............................................................................VLGTEEPGTG--LGLRRLLLLLSPQSPTHGLRSLATHTLHALTP........................................................................................................................................................................... 55
2 -5.260sp|Q8N7U6|EFHB_HUMAN EF-hand domain-containing family member B OS=Homo sapiens GN=EFHB PE=2 SV=4  ali   12  68.................................................................................EEGSAYSLLYPTIFAR-------------KGVFERDFFKTRSKEEIAEILCNI-----VKLSDEEFENVWNLASKKHEVCVENIRNVLDELRHADRIKCKTLM............................................................................................................ 156
3 -4.820sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1  ali   18  74................................................................................MDSVNNEELTDELLGCLA----AELLALDEKDNNSCQKMANETDPENLNLVLR............................................................................................................................................................... 122
4 -4.310sp|Q4ZHG4|FNDC1_HUMAN Fibronectin type III domain-containing protein 1 OS=Homo sapiens GN=FNDC1 PE=1 SV=4  ali   13  86................................................................................FDLAGRKRFVAPYVT..................................................................................................................................................................................................... 100
5 -4.210sp|A6NCL1|GEMC1_HUMAN Geminin coiled-coil domain-containing protein 1 OS=Homo sapiens GN=GMNC PE=3 SV=2  ali   13  2..............................................................................LSSEFANCEEQAGPPVDPWV---------LQTLGLKDLDTIDDTS......................................................................................................................................................................... 37
6 -4.100sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN PE=1 SV=2  ali   17  7................................................................................................................FCDIRHLDDWAKSQLIEMLKQAAALVITVMYTDGSTQLGADQTPVSSVRGIV................................................................................................................................ 58
7 -4.070sp|O60269|GRIN2_HUMAN G protein-regulated inducer of neurite outgrowth 2 OS=Homo sapiens GN=GPRIN2 PE=1 SV=2  ali   18  13................................................................................MREVRAGGCCHALPATGILAFPKLVASVSESGL-QAQHG............................................................................................................................................................................. 50
8 -4.070tr|F5GXK0|F5GXK0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ANK3 PE=4 SV=1  ali   31  1..............................................................................ISDVEEGEDAMTG--------------DTDKYLGPQDLKELGDDSL........................................................................................................................................................................ 32
9 -4.050sp|Q92902|HPS1_HUMAN Hermansky-Pudlak syndrome 1 protein OS=Homo sapiens GN=HPS1 PE=1 SV=2  ali   4.......................................................................................TLLAPVIISSMTMLEKLSDTYTCFSTENGNFL-------VLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHFGLVTVDG........................................................................................................................ 82
10 -3.980sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3  ali   10  4..............................................................................AGTQDSEWGC-LGSVIIFYEPLQPPQVKALYLAGPNCLSPWKCQESDMADLPGNILLYYTAKACKNSICLDLSTNCLHGRLTGNKVVNWDIKDIINCIG................................................................................................................... 108

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.