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Query: [K] COG1522 Transcriptional regulators, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKVELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLDPGKIGLGLSAYINVRLEKQGGAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFVEDMDHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALPVVVLast
1 -6.230sp|Q9BVM2|DPCD_HUMAN Protein DPCD OS=Homo sapiens GN=DPCD PE=1 SV=2  ali   18  14.QKTALLQDGRRKVHYLFPDGK----EMAEEYDEKTSELLVR-RVKSALGAMGQWQLEVDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSVDQKYYKKFSIPDLDRHQLPLDDALLS---FAHANCTLIISYQKPKEVVVAE. 180
2 -5.240sp|Q5T011|SZT2_HUMAN Protein SZT2 OS=Homo sapiens GN=SZT2 PE=2 SV=3  ali   9  2..........................................LQRALPGGII---LMELAFQGCYFCVKQFALECSRIPMGQAVNSQLSMLFTEECDKVRDLMHVHSFS--YDFHLRLVHQHVLGAHLVLRHGYHLTTFLRHFLAHHPDGPHFGRNHI.... 112
3 -4.950sp|Q92665|RT31_HUMAN 28S ribosomal protein S31, mitochondrial OS=Homo sapiens GN=MRPS31 PE=1 SV=3  ali   12  27.....................VEFAKQLATVNEQPLQNGFEELIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELV--------TCGLSKNPYLSVKQKVEHIEWFRNYFNEKKDILKES...................... 137
4 -4.720sp|Q9UJA3|MCM8_HUMAN DNA replication licensing factor MCM8 OS=Homo sapiens GN=MCM8 PE=1 SV=2  ali   16  16..........KRFISALNNVAERTYNQIAKELNIQVADFENFIGSLNDQGYL.............................................................................................................. 66
5 -4.570sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   16  20LNLPVCKGMMEAMLYHIMTRPGIPESSLLRHYQLQPVAVLELLQGLESLGCIR............................................................................................................. 74
6 -4.450sp|O43156|TTI1_HUMAN TEL2-interacting protein 1 homolog OS=Homo sapiens GN=TTI1 PE=1 SV=3  ali   11  48............LSACLYSPSSQKPAAVSEELKLAVIQGLSTLMHSAYGDIILTFYEPSILPRLGFAVSLLLGL-AEQEKSKQIKIAALKCLQVLLLQCDC-LFASFLPGISTALTRLITGDFKQGHSIVVSSLKIFYKT...................... 190
7 -4.080tr|E9PL38|E9PL38_HUMAN Uncharacterized protein OS=Homo sapiens GN=PSMD13 PE=4 SV=1  ali   13  13.............................................NSGPGQPAVWHRLEELYTKKVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEDMLNNLPGVTSVHSRF............... 117
8 -4.070sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   14  7............IIEAVTNLRLIESKQEGVSTKCCKKSIVRLVRNLSEEGLLRLYRTTVIQDGIKKKVDLVVHPSMDQNDPL................................................................................ 88
9 -4.060sp|Q02818|NUCB1_HUMAN Nucleobindin-1 OS=Homo sapiens GN=NUCB1 PE=1 SV=4  ali   8  1...LYYHRYLQEVIDVLETDGHIKSGKLSRELDFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQDPNVQVDHLNLLKQFEHLDPQNQHTFEAR---------------DLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESL.......... 146
10 -3.900sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens GN=PTCHD2 PE=2 SV=2  ali   12  197.....VNRTRQVDNHVIGDPGSVSSFDLFKEIGHLCHLCIAANSELVKPG-ISSFLQMLHPECKELPEPNLL--------PGQLSHGAVGVREGRVQWISMAFESTTYKGKSSF----TYSDYLRWESFLQQQLQALPEGSVLRRGF............... 341
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.