FFAS03 results for COG1522

Query: [K] COG1522 Transcriptional regulators, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160`
#	Score	Template	Links and tools	%id	First	`MSKVELDKIDRKILEVLQSNGRLTNLEVAERVNLSPSPCLRRIRRLEESGVIRQYAALLDPGKIGLGLSAYINVRLEKQGGAPKGKAPSDIFRAAVATWPEVVTCYAMTGEMDYLLKVFVEDMDHFARFIRDQLLAHPAVIDVKSSFALERIKDTTALPVVV`	Last
1	-6.230	`sp\|Q9BVM2\|DPCD_HUMAN Protein DPCD OS=Homo sapiens GN=DPCD PE=1 SV=2`	`ali`	18	14	`.QKTALLQDGRRKVHYLFPDGK----EMAEEYDEKTSELLVR-RVKSALGAMGQWQLEVDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSVDQKYYKKFSIPDLDRHQLPLDDALLS---FAHANCTLIISYQKPKEVVVAE.`	180
2	-5.240	`sp\|Q5T011\|SZT2_HUMAN Protein SZT2 OS=Homo sapiens GN=SZT2 PE=2 SV=3`	`ali`	9	2	`..........................................LQRALPGGII---LMELAFQGCYFCVKQFALECSRIPMGQAVNSQLSMLFTEECDKVRDLMHVHSFS--YDFHLRLVHQHVLGAHLVLRHGYHLTTFLRHFLAHHPDGPHFGRNHI....`	112
3	-4.950	`sp\|Q92665\|RT31_HUMAN 28S ribosomal protein S31, mitochondrial OS=Homo sapiens GN=MRPS31 PE=1 SV=3`	`ali`	12	27	`.....................VEFAKQLATVNEQPLQNGFEELIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELV--------TCGLSKNPYLSVKQKVEHIEWFRNYFNEKKDILKES......................`	137
4	-4.720	`sp\|Q9UJA3\|MCM8_HUMAN DNA replication licensing factor MCM8 OS=Homo sapiens GN=MCM8 PE=1 SV=2`	`ali`	16	16	`..........KRFISALNNVAERTYNQIAKELNIQVADFENFIGSLNDQGYL..............................................................................................................`	66
5	-4.570	`sp\|Q12789\|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4`	`ali`	16	20	`LNLPVCKGMMEAMLYHIMTRPGIPESSLLRHYQLQPVAVLELLQGLESLGCIR.............................................................................................................`	74
6	-4.450	`sp\|O43156\|TTI1_HUMAN TEL2-interacting protein 1 homolog OS=Homo sapiens GN=TTI1 PE=1 SV=3`	`ali`	11	48	`............LSACLYSPSSQKPAAVSEELKLAVIQGLSTLMHSAYGDIILTFYEPSILPRLGFAVSLLLGL-AEQEKSKQIKIAALKCLQVLLLQCDC-LFASFLPGISTALTRLITGDFKQGHSIVVSSLKIFYKT......................`	190
7	-4.080	`tr\|E9PL38\|E9PL38_HUMAN Uncharacterized protein OS=Homo sapiens GN=PSMD13 PE=4 SV=1`	`ali`	13	13	`.............................................NSGPGQPAVWHRLEELYTKKVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEDMLNNLPGVTSVHSRF...............`	117
8	-4.070	`sp\|Q12789\|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4`	`ali`	14	7	`............IIEAVTNLRLIESKQEGVSTKCCKKSIVRLVRNLSEEGLLRLYRTTVIQDGIKKKVDLVVHPSMDQNDPL................................................................................`	88
9	-4.060	`sp\|Q02818\|NUCB1_HUMAN Nucleobindin-1 OS=Homo sapiens GN=NUCB1 PE=1 SV=4`	`ali`	8	1	`...LYYHRYLQEVIDVLETDGHIKSGKLSRELDFVSHHVRTKLDELKRQEVSRLRMLLKAKMDAEQDPNVQVDHLNLLKQFEHLDPQNQHTFEAR---------------DLELLIQTATRDLAQYDAAHHEEFKRYEMLKEHERRRYLESL..........`	146
10	-3.900	`sp\|Q9P2K9\|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens GN=PTCHD2 PE=2 SV=2`	`ali`	12	197	`.....VNRTRQVDNHVIGDPGSVSSFDLFKEIGHLCHLCIAANSELVKPG-ISSFLQMLHPECKELPEPNLL--------PGQLSHGAVGVREGRVQWISMAFESTTYKGKSSF----TYSDYLRWESFLQQQLQALPEGSVLRRGF...............`	341

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

Comments and questions to: webmaster