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Query: [M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4), from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHFSRIVSGLACSIILNISVSNANAAQVENYTQYLPDGANLALMVQKIGASTPAIDYHAQQMALPASTQKVLTALAALLQLGPDFRFNTTLESHGTITDGVLRGNLIARFGGDPTLTRQQLRNMVATLRKAGVKQIAGDVVIDTSVFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYSAPNPGDTAFIRVASYYPVQMFSEVRTLAKGSPDAQYCELDVVPGELNRFTLTGCLTQRSEPLPLAFAVQNGASYAGAILKDELKKADIQIDGNLRRQTIPSPAGNVLAQTQSAPLHDLLKIMLKKSDNMIADTVFRTIGHQRFGVPGTWRSGADAVRQILRQKAGVDLGNSIVVDGSGLSRHNLISPATMMQVLQYIAQNDQELNFISMLPLAGYDGTLRYRGGLHEAGVNGKVSAKTGALQGVYNLAGFITTASGQRMAFVQFLSGYAVPPEDQKNRRAPLVRFESRLYKDIYQNNLast
1 -5.110tr|E7EWK8|E7EWK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD1 PE=4 SV=2  ali   10  1.............................................................................................................................................................................................................................................................................................................................................................................KGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQA-------GEDWNVEKGTSAGGGQKVRLLKKALEKHADKEDLVILFADSYDV----FASGPRELLKKFRQARSQVVFSA 110
2 -4.830sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 PE=1 SV=3  ali   10  3...................................................................................................................................................................................................................................................................................................LHHLLPDHAPGQSVALLPNMTQLYMQMVLALSPPGHLPTSSLLDLGEVALRGLETGKVDIAPPLIAFGATHSLLTSFCVCTGPGHQQTGYAFTHLSLQEFLAALHLM-VNKDTLTQYVTLHSRWVQRTKARLGLSD-PTFLAGLASCTCRPFLS---LAQGNEDCVGAKQAAVVQVLKKLAT......... 191
3 -4.410sp|P08F94|PKHD1_HUMAN Fibrocystin OS=Homo sapiens GN=PKHD1 PE=1 SV=1  ali   11  17.................................................................IGDLPNFIRVSDENLTGVNPAAATRVVYDGGVFLGPIFGDMLATANQHTQVV............................................................................................................................................................................................................................................................................................................................................................................. 68
4 -4.340sp|Q08AD1|CAMP2_HUMAN Calmodulin-regulated spectrin-associated protein 2 OS=Homo sapiens GN=CAMSAP2 PE=1 SV=3  ali   7  20...................................................KPFDHYDFSRAKIACNLAWLVAKAFGTENVPEELQ-YDQEHIKPPVVNLLLSAELYCRAKSDAAKPLLGHDAVIQALAQKGLYVTDQEKLVTERDLHKKPIQMS--------AHLAMIDTLMM.................................................................................................................................................................................................................................................................................................................... 145
5 -4.330sp|Q8WYQ4|CV015_HUMAN Uncharacterized protein C22orf15 OS=Homo sapiens GN=C22orf15 PE=2 SV=1  ali   15  8..........................................................................................................................................................................................................................................................................................................................................................................GAGCSVLVNTSCRLVNLTAHLRQKAGLPPDATIALLAEDGNLVSLEEDLKEGASRAQTMGNSLLKAIYVLVRIIKGEDMASTRYESLLENLD............................ 101
6 -4.080sp|Q15154|PCM1_HUMAN Pericentriolar material 1 protein OS=Homo sapiens GN=PCM1 PE=1 SV=4  ali   10  1............................................................................................................................................................................................................................................................................................PRIDTQQLDRQIKAIMKEVIPFLKEHMDEVCSSQLLTSVRRMVLTLTQQNDESKEFVKFFHKQLGSILQDSLAKFAGRKLKDCGEDLLVEISEVL....................................................................................................... 95
7 -4.080sp|Q02241|KIF23_HUMAN Kinesin-like protein KIF23 OS=Homo sapiens GN=KIF23 PE=1 SV=3  ali   16  12...........................................................ETVMQPHVPHAITVSVANEKALAKCEKYHQELASDGEIETKLIKGDIYKTRGGGQSVQFTDI......................................................................................................................................................................................................................................................................................................................................................................... 76
8 -4.030sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2  ali   11  44.................................................................................................................................................................................................................................................................................................NVQGLYPQSPLLSTIAEFALKEEPVDVEKMRKCLLKQLERAEVRLE-GIDTILKLASKNFLLPSVQYAMFCG-RLIPEGIDIGEPLTDCLKDV.................................................................................................... 136
9 -4.020sp|Q5JPE7|NOMO2_HUMAN Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1  ali   15  1........................................................................................................................................................................................................................................................................................................................................................................................................SEDIVVGCGGFVKSDVEINYSLIEIKLYTKHGTLKYQTDCAGYFMIPLYDKGDFILKIEPPLG........................... 66
10 -4.020sp|Q15155|NOMO1_HUMAN Nodal modulator 1 OS=Homo sapiens GN=NOMO1 PE=1 SV=5  ali   15  1........................................................................................................................................................................................................................................................................................................................................................................................................SEDIVVGCGGFVKSDVEINYSLIEIKLYTKHGTLKYQTDCAGYFMIPLYDKGDFILKIEPPLG........................... 66
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.