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Query: [K] COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEREKITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGAKNIEDVKRTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVGLILast
1 -7.060sp|Q8N3R3|CC023_HUMAN Uncharacterized protein C3orf23 OS=Homo sapiens GN=C3orf23 PE=2 SV=2  ali   9  5.....QLQLSDIRWQRSWGIAHRCSQLHSLSRLAQQNLETLKKAKGCTIIFTDRSGMSAVGHVMLGTMDVHHHWTKLFERLPS--YFDLQRRLMILEDQISYLLGGIQVEYYSLLDVFYNRLLKSRILFHPRSLRGLQMILNSDRYAPSLHELGHFNIPTLCDPANLQWFI............. 181
2 -5.510sp|Q12769|NU160_HUMAN Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3  ali   11  6......DKVLRLLDVIGLPELV-IQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGI-----IESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLI 177
3 -4.820sp|Q4ZG55|GREB1_HUMAN Protein GREB1 OS=Homo sapiens GN=GREB1 PE=2 SV=1  ali   18  165...................................................................................................VLSVDCYLNLGSQISVCYVSSRPHSLNISCSDLLFSGLLLYLCDSFVGASFFLKGATLCVICQDRSSLRQTVVRL.......... 244
4 -4.790sp|Q9C091|GRB1L_HUMAN GREB1-like protein OS=Homo sapiens GN=GREB1L PE=2 SV=2  ali   22  166...................................................................................................VLAIDCYLNIGPEVAICYISSRPHSSNVNCEGVFFSGLLLYLCDSFVGADLFLKGATLCVICQDRSSLRQTIVRL.......... 244
5 -4.710tr|B4DH93|B4DH93_HUMAN Uncharacterized protein OS=Homo sapiens GN=DEPDC5 PE=2 SV=1  ali   7  1......................................................................................................VPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAAFEIK-------MAVTAAVL----------FEMVQGWHRKATSCGF. 67
6 -4.710sp|O75140|DEPD5_HUMAN DEP domain-containing protein 5 OS=Homo sapiens GN=DEPDC5 PE=2 SV=1  ali   7  1......................................................................................................VPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLNAAFEIK-------MAVTAAVL----------FEMVQGWHRKATSCGF. 67
7 -4.480sp|Q8NG50|RDM1_HUMAN RAD52 motif-containing protein 1 OS=Homo sapiens GN=RDM1 PE=1 SV=1  ali   15  6................................................................................................................................................KLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCS 45
8 -4.410sp|Q8NDB2|BANK1_HUMAN B-cell scaffold protein with ankyrin repeats OS=Homo sapiens GN=BANK1 PE=1 SV=3  ali   9  36...............................................................................................................EVEFTSSNKRIRTRPALWNKKVWCMKALEFPAGSVHVNVYCDGIVKATTKIKYYPTAKAKECLFRMADSGESL 108
9 -4.370sp|Q9BQT9|CSTN3_HUMAN Calsyntenin-3 OS=Homo sapiens GN=CLSTN3 PE=1 SV=1  ali   13  43.......................................................................................................................................................TSAYLTIAGVESITVYEEILRQA.......... 65
10 -4.370sp|O94985|CSTN1_HUMAN Calsyntenin-1 OS=Homo sapiens GN=CLSTN1 PE=1 SV=1  ali   13  43.......................................................................................................................................................SELGMTFTGVDTMASYEEVLHLL.......... 65
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;