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Query: [R] COG2351 Transthyretin-like protein, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MGRLTTHVLDTAAGTPGKDLAITLFKIVNNLRQPIKTVRTNHDGRCEAPLLEGEALQAGIYELDFAVGDYYRAAGVSLPDPAFLDVVTLRFGVADAGAHYHVPLLVSPWSYSTYRGSLast
1 -10.300sp|Q9BZ71|PITM3_HUMAN Membrane-associated phosphatidylinositol transfer protein 3 OS=Homo sapiens GN=PITPNM3 PE=1 SV=2  ali   21  56............................SGRWVHLDTEITNSSGRITYNVPRPRRLGVGVYPVKMVVRG................................................ 96
2 -10.200sp|O00562|PITM1_HUMAN Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNM1 PE=1 SV=4  ali   26  56............................SGKWIHFGTEVTNSSGRLTFPVPPERALGIGVYPVRMVVRG................................................ 96
3 -10.100sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol transfer protein 2 OS=Homo sapiens GN=PITPNM2 PE=1 SV=1  ali   24  56............................SGEWLYLDTLVTNNSGRVSYTIPESHRLGVGVYPIKMVVRG................................................ 96
4 -5.500sp|O60496|DOK2_HUMAN Docking protein 2 OS=Homo sapiens GN=DOK2 PE=1 SV=2  ali   14  42......HIYDEPEGVAALSLYDSPQEPRGEAWRR................................................................................... 69
5 -5.490sp|Q8WXH0|SYNE2_HUMAN Nesprin-2 OS=Homo sapiens GN=SYNE2 PE=1 SV=3  ali   4  32LNEAGNFLVEVSNDVVGSSISKELRRL-NKRWRKLVSKTQLEMNLPLMIKKQDQPTFDNSGNIL..................................................... 94
6 -5.360sp|P82930|RT34_HUMAN 28S ribosomal protein S34, mitochondrial OS=Homo sapiens GN=MRPS34 PE=1 SV=2  ali   14  11..............................................................................DEPCYWRLTRVRPDYTAQNLDH------KAWGILTFKGK 44
7 -5.320sp|Q9NVH1|DJC11_HUMAN DnaJ homolog subfamily C member 11 OS=Homo sapiens GN=DNAJC11 PE=1 SV=2  ali   22  234......................................................................................VSLKVKLNRASQTYFFPIHLTD......... 255
8 -4.840sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3  ali   13  15...THTHVVDITRTSPAAKSPSAQLMEQVAQLKSLSDTVEKLKDEVLKETVSQRPGATVPTDFTFPSSAFLRAKEEQQDDTVYMGKVTF----CAAGFGQRHRLVLTQ......... 117
9 -4.670sp|O15091|MRRP3_HUMAN Mitochondrial ribonuclease P protein 3 OS=Homo sapiens GN=KIAA0391 PE=1 SV=2  ali   22  28..................................................................................FQRILSYDTVVQTTGDSWHIPY............. 49
10 -4.670sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens GN=TMTC4 PE=1 SV=2  ali   9  66................................................................WHHDFWGSRLSSNTSHKSYRPLTVLTFRI-----NYYLSGGFHPVGFHV.... 109
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;