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Query: [K] COG2378 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPTDNVVSVVSPYHMEMYNMRKASRLFEIIQILRLARRPVTAQTIADMLEVTARSVYRDIAALQTMRVPIEGERGVGYILRPGFNLPPLMFSIEETEAIVLALAMVDRSGDAELRQAAKKVSDKIAASLPEPLSKTLSANALHAWGSIAPAPAGIDLATVRRAVRDEERLDLCYSDESGVETQRRIRPIAVIYYSETVNIVAWCELRHAIRNFRSDRVLDCAATGSFFKMEGEKLRRLWMSGWQSGQPGGELGRPISGVTLPLast
1 -5.430sp|Q6P9G0|CB5D1_HUMAN Cytochrome b5 domain-containing protein 1 OS=Homo sapiens GN=CYB5D1 PE=2 SV=1  ali   12  36.............YYEVGRLSAKTRSIRIINTLTSQEHTLEVGVLESIWEILHRYLPYN-FTLEENGIRDEEEEFDYLSMDGTLHTPAILL-NDDLTEL................................................................................................................................................................... 139
2 -5.370sp|Q5R3I4|TTC38_HUMAN Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1  ali   17  1..................................................MAAASPLRDCQAWKDARLPLSTT------------------SNEACKLFDATLTQYVKWTNDKSLGGIEGCLSKLKAADPTFVMGHAMATGLVLIGTGSSVKLDKELDLAVKTMVE--------ISRTQPLTRR.............................................................................. 108
3 -5.290sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   22  1......................LKRRNLIIEAVTNLRLIESLFTIQKMIKCCKKSIVRLVRNLSEEG................................................................................................................................................................................................... 56
4 -5.270sp|Q86T24|KAISO_HUMAN Transcriptional regulator Kaiso OS=Homo sapiens GN=ZBTB33 PE=1 SV=2  ali   15  2.............................................CRSLQIRQYAYLSD----RSSTIPAMKDDGIGYKVDTGKEPPVGTTTSTQNKPMTWEDIFIQQENDSIFKQNVTDGSTEFEFIIPES.................................................................................................................................. 84
5 -5.070sp|O75037|KI21B_HUMAN Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2  ali   20  2.....................................KAVSAECLGPPLDISTKNITKSLASLVEI-----KEDGVGFSVRDPYYRDRVSRT.......................................................................................................................................................................... 51
6 -4.910sp|Q58A45|PAN3_HUMAN PAB-dependent poly(A)-specific ribonuclease subunit 3 OS=Homo sapiens GN=PAN3 PE=1 SV=3  ali   11  37....................GRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDFHQVTEAGAPWIDLS----KLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGQL......................................................................................................................................... 146
7 -4.880sp|Q8IWN7|RP1L1_HUMAN Retinitis pigmentosa 1-like 1 protein OS=Homo sapiens GN=RP1L1 PE=1 SV=4  ali   10  28.............KVRFKDSPRYQELLSISKDLQLDSGLWELTWSQALPDLGSHAMTENFTPTSSSGVDISSGSGGS......................................................................................................................................................................................... 100
8 -4.740sp|O15091|MRRP3_HUMAN Mitochondrial ribonuclease P protein 3 OS=Homo sapiens GN=KIAA0391 PE=1 SV=2  ali   16  14...............DIKDDNYSNKLLDILSYLRNNQLYPG-ESFAHSIKTWFESVPGKQWKGQFTTV-----RKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSR.................................................................................................................................. 124
9 -4.390tr|E9PIW9|E9PIW9_HUMAN Uncharacterized protein OS=Homo sapiens GN=SAMD1 PE=4 SV=1  ali   14  3......................QEWILDTIDSLRSRKARPDLERICRMVGPEPERTRAELEKLIQQRLRVSYKGSISYR....................................................................................................................................................................................... 65
10 -4.380sp|Q92794|KAT6A_HUMAN Histone acetyltransferase KAT6A OS=Homo sapiens GN=KAT6A PE=1 SV=2  ali   8  10......................TEWILEAIKKVKKQKQRPSEERICNAVGLDRKTVLEQLELSVKDGLKVSNKGLNSYK....................................................................................................................................................................................... 72
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 7 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24