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Query: [S] COG2512 Uncharacterized membrane-associated protein/domain, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDLLMEMNLRFYIICIAALLTLLASASLALGVPFLEDNNVTATVHGATYAKDTLELLNDTVISINSTPSQSMVAKDGIYSFELAPGDYAITARYYRNNTLIYSKETTFKIEGEGNYVFDLLLYPVSEYPVTEPIQDSYSIDPPETIGIGPSTTDYLPISYLSIVFVLILLLGGGYKFSSKHKNTNKNKFQERKFDIPGILVKVPGRSTGLGVRSESSGGAVSLTEPIIEPAGNPDIETAALNRIPLSPELCEVLDIIRGHKGRITQKDLRSKLDYSEVKVSLMLSELEKRGLIRKLRNGRENILVLVDEEHLast
1 -5.980sp|Q9HCL2|GPAT1_HUMAN Glycerol-3-phosphate acyltransferase 1, mitochondrial OS=Homo sapiens GN=GPAM PE=1 SV=3  ali   11  44........................................................................................................................................................................................................................................................PEPEYLQKLHKYLITTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKQKRVSVLELSST.. 105
2 -5.490sp|Q53LP3|ANR57_HUMAN Ankyrin repeat domain-containing protein 57 OS=Homo sapiens GN=ANKRD57 PE=1 SV=1  ali   11  14........................................................................................................................................................................................................................................................GPEAVLRFLAERGGRALHAELVQHFR-ARAHFKELVNAV---ATVRVDPADGAKYVHLK.... 80
3 -5.360sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   29  30..........................................................................................................................................................................................................................................................EAMLYHIMTRPG-IPESSLLRHYQLQPVAVLELLQGLESLGCIRKRWL............. 78
4 -5.230tr|F5GZV9|F5GZV9_HUMAN Uncharacterized protein OS=Homo sapiens GN=MEFV PE=4 SV=1  ali   13  13.....................................................................................................................................................................................................................................................LEQQEHFFVASLEDVGQMVGQIRKAYDTRVSQALLDALIGELEAK..................... 59
5 -5.120sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   11  2.......................................................................................................................................................................................................................................................KRRNLIIEAVTNLRLIESLFTIQKSTKCCKKSIVRLVRNLSEEGLLRLYRTGIKKKVDL..... 76
6 -4.930sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26 PE=2 SV=1  ali   14  1....................................................................................................................................................................................................................................QDQRQYIVAEFEQGHQFLREREEHLLEQLAKLEQELTEGREKFKSRGVGARLALVISELEGK..................... 64
7 -4.920sp|O00233|PSMD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=3  ali   19  9...................................................................................................................................................................................................................................................EEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVD-----------LYQVRTARHNIICLQNDHK 65
8 -4.860sp|O15228|GNPAT_HUMAN Dihydroxyacetone phosphate acyltransferase OS=Homo sapiens GN=GNPAT PE=1 SV=1  ali   12  252........................................................................................................................................................................................................................................................SEEQYLAAVRKFTSQLDQGTSQCYDVLSSDVQKNALAACVRLGVVEKKKINNNCIFNVNEPA. 314
9 -4.800sp|Q9UJA3|MCM8_HUMAN DNA replication licensing factor MCM8 OS=Homo sapiens GN=MCM8 PE=1 SV=2  ali   8  12......................................................................................................................................................................................................................................................RSTAKRFISALNNVAERTYNNQIAKELNIQVADFENFIGSLNDQGYLLKKGPKVYQLQTM..... 79
10 -4.800tr|F5H0Q3|F5H0Q3_HUMAN Uncharacterized protein OS=Homo sapiens GN=MEFV PE=4 SV=1  ali   13  13.....................................................................................................................................................................................................................................................LEQQEHFFVASLEDVGQMVGQIRKAYDTRVSQALLDALIGELEAK..................... 59
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.