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Query: [K] COG3888 Predicted transcriptional regulator, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLRDVLLRELKRARGLGIDQFQIEEMMGFSKSTVSEALKDLEEKGIIKRRTIGGKIKHVWLAEYYPYYDEKLLRIGCLRSTEYVKFVSVAKNYSESKGIDLIVRFYDDAISLMNDLSQGLLEFALAPIFTEIIYSISNRNSIILGAVASGGSGVYKNVNCNCGKILTSESSSMMILAREFAKTRKISEIAIFKDPRRAIKDYESFKAEYIVIWEPYASKIMGEKMASFSDVLDSFPCCGISVSENNRENRTLIEIVRLYKRSRFTAREDVIDIFAKSTSVSPKTAKASLENYIWDIKFYRSDLKKYLEFIGYPPIEEIIEKIYEEVLast
1 -7.740sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   13  9..LMEKLSVMLSTRTNHIETLGKLREELGLCERTFKRLYQYMLNAGLAKVVSLRLQEIHPECGPCKKKGTDVMVRC........................................................................................................................................................................................................................................................... 83
2 -4.710sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   13  1LKRRNLIIEAVTNLR----QEKQEGVSTKCCKKSIVRLVRNLSEEGLLRLYRT.................................................................................................................................................................................................................................................................................. 63
3 -4.610sp|Q9HCL2|GPAT1_HUMAN Glycerol-3-phosphate acyltransferase 1, mitochondrial OS=Homo sapiens GN=GPAM PE=1 SV=3  ali   12  45...EPEYLQKLHKYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKQKRVSVLELSSTFLPQCNRQKL............................................................................................................................................................................................................................................................. 115
4 -4.370sp|P33991|MCM4_HUMAN DNA replication licensing factor MCM4 OS=Homo sapiens GN=MCM4 PE=1 SV=5  ali   18  14.ELAEALKKLILSKKTPALKYQQLFEDIRITKDMFEEALRALADDDFLTVT.................................................................................................................................................................................................................................................................................... 70
5 -4.210sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4  ali   21  27.GMMEAMLYHIMTR--PGIPESSLLRHYQLQPVAVLELLQGLESLGCIRKRWL.................................................................................................................................................................................................................................................................................. 78
6 -4.190sp|Q12824|SNF5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Homo sapiens GN=SMARCB1 PE=1 SV=2  ali   19..........LEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKDHGYTTLALLKASEVEEILDGNDEKYKAVSIS.................................................................................................................................................................................................................................. 113
7 -4.010tr|B5MCL5|B5MCL5_HUMAN Uncharacterized protein OS=Homo sapiens GN=SMARCB1 PE=4 SV=1  ali   19..........LEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKD--ATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLSFDDHDPAVI................................................................................................................................................................................................................. 130
8 -3.870sp|Q8IYL2|TRM44_HUMAN Probable tRNA (uracil-O(2)-)-methyltransferase OS=Homo sapiens GN=METTL19 PE=2 SV=2  ali   10  14..........................................................................................................................................................................................................LIGNHSDELTPWIPVIAARSSYNCRFFV------PCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC-HVDEDCLRIPST........................................... 91
9 -3.840tr|C9JLE0|C9JLE0_HUMAN Uncharacterized protein OS=Homo sapiens GN=MBNL2 PE=4 SV=1  ali   29..........................................................................................................................................................LPKRQALEKSNGTSAVFNPSVLHYQQALTSAQLQQHAAFIPTVPMMHSATSATVSAATT--PFAATATANQL..................................................................................................... 103
10 -3.780sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A OS=Homo sapiens GN=BAZ2A PE=1 SV=4  ali   14  22IRDPEMLDAMLKALHPRGIREKALHKHLNKHRDFLQEVCLR.............................................................................................................................................................................................................................................................................................. 62

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.