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Query: [S] COG4121 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFIMSSISHAQLGWNDAGTPVSDQFDDVYFSNVNGLAETRYVFLEQNHLPQRWHNDDQRRFVIAETGFGTGLNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDLIQAHQAWPELAQFAQKLHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLVDAWFLDGFAPSKNPEMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMIAGSLSEKVPYTNIAPEFRFEATHGLQEVAIIGGGIASATLATTLALast
1 -5.890sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens GN=TMTC4 PE=1 SV=2  ali   17  36..................................................................................................................................................RSYDGDFVFDDSEAIVNNKDLQAETPLGDLWHHDF--------WGSRLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVGFHV.......................................................... 109
2 -5.600tr|F5H1Y7|F5H1Y7_HUMAN Uncharacterized protein OS=Homo sapiens GN=TBR1 PE=4 SV=1  ali   20  3.....................................................................................................................................................................................TPANNRLDFAASAYDTATDFAGNAATLLSYAAAGVKALPLQAAG............................................................. 46
3 -5.600sp|Q16650|TBR1_HUMAN T-box brain protein 1 OS=Homo sapiens GN=TBR1 PE=1 SV=1  ali   20  3.....................................................................................................................................................................................TPANNRLDFAASAYDTATDFAGNAATLLSYAAAGVKALPLQAAG............................................................. 46
4 -5.510sp|Q9H649|NSUN3_HUMAN Putative methyltransferase NSUN3 OS=Homo sapiens GN=NSUN3 PE=2 SV=1  ali   10  24................................................................................................................................................................................HFEKQYSKELGDAWNTVREILTSPSCQYAVLLNRFNYPFELEKDLHLKGY............................................................ 74
5 -5.400sp|Q9HC84|MUC5B_HUMAN Mucin-5B OS=Homo sapiens GN=MUC5B PE=1 SV=3  ali   11  1...................................................................................................................................................................................AIPLRQVNETWTLE---NCTVARCVGDNRVVLLDPKPVANVTCVNKHLPIKVSDPSQ.................................................. 54
6 -4.960sp|Q9Y236|OSGI2_HUMAN Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens GN=OSGIN2 PE=2 SV=1  ali   30  11....................................................................................................................................................................................................................................................................EDSSVTFPVVIIGNGPSGICLSYMLS 36
7 -4.320sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3  ali   10  17.............................................................ILHEIG-GTGIFVFLFARVVELSSCEETQALALRVILSLIKYNQQRVHELENCNGLSMIHQVLIKQKCIVGFYILKTLLEGCCGEDIIYMNENGEFKLDVDSNAIIQDVKLLEELLLD--------KIWSKALLAALEVLIRADHHQQMFNIKQLLKAQVVH............................................................... 177
8 -4.240sp|Q8N1Q8|THEM5_HUMAN Thioesterase superfamily member 5 OS=Homo sapiens GN=THEM5 PE=2 SV=2  ali   16  54..................................................................................................................................................................................DYALP--NAS-WCSDMYQEFLEKTKSSG----------------------IKLPSFKSNRDHIRGLKLPSGLAVSSD---KGDCRIFTRCIQVEGQGF.......... 127
9 -4.150sp|Q92665|RT31_HUMAN 28S ribosomal protein S31, mitochondrial OS=Homo sapiens GN=MRPS31 PE=1 SV=3  ali   12  46........EELIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELVTCGLSK--NPYLSVKQKVEH.......................................................................................................................................................................................................... 119
10 -4.140sp|Q96CB9|NSUN4_HUMAN Putative methyltransferase NSUN4 OS=Homo sapiens GN=NSUN4 PE=1 SV=2  ali   16  48............................................................................................................................................................................FDMTYSVQFG-----DLW-PSIRVSLLSEQKYGALVNNFAAWDHVSAK.................................................................. 89

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.