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Query: [S] COG5501 Predicted secreted protein, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLILALIPVTLTASLALAEPEKPNNPLADGTTWRDLKGDVVGEAAILDGSALFSVTAPYRANDAATVPVTIEQTDAAADPIESLKLVIDENPAPVAAEIRFGPAMAPLKFETRVRVNQYSNIRAIAETPRGIFMHGRFVKASGGCSAPATKDPVAALKDMGEMRLKLFGGKGEVQKARREAQIMIRHPNYSGLQRDQITQLFVSAKFITELVVKQGDELLFALDGGISISENPVFRFSYTDNGAPDFTVHAVDTDGNVFDRVLPKTPPALast
1 -5.960sp|Q8TDX9|PK1L1_HUMAN Polycystic kidney disease protein 1-like 1 OS=Homo sapiens GN=PKD1L1 PE=2 SV=1  ali   8  1.....................................................ILARNSDNFMN----PVLNCSLEVEARAPPNLGFRVHASGEALCLMMDFGDSSGVEMRLHNMSEAMAVTAYHQYSKGIFFHLLHFQLDMSDSDPSNLGYELISAFVTKGVYMLKAVIYNEFHGTEVELGPYYVEIGHEA-------------SAFMNSSSVHEDEVLVFADSQV---QKSTVVIHHFPSIPSYNVSFISQTQVGDS-QAWHSMTVW. 223
2 -5.660sp|Q9NS62|THSD1_HUMAN Thrombospondin type-1 domain-containing protein 1 OS=Homo sapiens GN=THSD1 PE=1 SV=1  ali   10  1..................................................EAEYLLLREPVALSNDTVYVDFQYFDGANGTLRNVSVLLEANTNQTVTTKYLLTNQSQGTLKFWFTMTPEATDNS---TPFPWWEKSAFLKVEWPVFHVDLNRSAKAAEGTFQVGLFTSQPLCPFPVDKPNIVVDVIF.................................................................................. 149
3 -5.200sp|Q96RY5|CRML_HUMAN Protein cramped-like OS=Homo sapiens GN=CRAMP1L PE=1 SV=3  ali   12  50..........................................GATTVRYKGRNLRIKAPMCRALKKLCDPDGLSDEEDQKPVRL-KVPIELQPRNNHAWARVQSLAQNPRL--RMIVELHRKVSSLIEFLKQKWALHE.................................................................................................................................... 144
4 -5.180sp|Q02086|SP2_HUMAN Transcription factor Sp2 OS=Homo sapiens GN=SP2 PE=1 SV=3  ali   12  1...............................EQVETVLIETTADNIIQAGNNLLIVQSPGGGQPAVVQQVQVVPPKAEQQQV--VQIPQQALRVVQAASATLPTVPQKPSQNFQIQAAEPTPTQVYIRTPSGEVQT...................................................................................................................................... 103
5 -4.670sp|Q9UKK3|PARP4_HUMAN Poly [ADP-ribose] polymerase 4 OS=Homo sapiens GN=PARP4 PE=1 SV=3  ali   9  2............................................TELSILGTVGVFFMPATKEIGTKQSFSLTMSIEMPYVIEFIFLKQKRTDCKAVISTMEGSSLDSSGFSLHIGLSAAYLPRMWVEKHP........................................................................................................................................... 116
6 -4.550sp|Q14DG7|T132B_HUMAN Transmembrane protein 132B OS=Homo sapiens GN=TMEM132B PE=2 SV=2  ali   9  2...................................................GSVVVYPTQDDLKWSLVSLD-----------ENVVISVPLNLVTATFLVSLTSSSVADQFTLRIKAAAGVKITAVRVSSEDQWAVQEEIDNGSTQTSAPDTQSRVNGSFYEILQVDFGIDNSSDLAGAQQITWQVEYPIEDSMSELVVSEIFVSQTTFVGIVPLAMDTEVLNTAILTGKPV------------SVPVKVVGVQEDGSVVDVSESVECKS 209
7 -4.400sp|Q86Y33|CD20B_HUMAN Cell division cycle protein 20 homolog B OS=Homo sapiens GN=CDC20B PE=2 SV=3  ali   17  27....................................................................................................................LKQLFVTQNVVQQANGKMQLCEQSECVWKGCKDGVRDESFHLKSSGDINDSILQP---------EVKIHI-----TGLRND......................................................................... 93
8 -4.370sp|Q8TEP8|CE192_HUMAN Centrosomal protein of 192 kDa OS=Homo sapiens GN=CEP192 PE=1 SV=2  ali   7  1...................................................................LPEHLILVAPSPCDMAKTGRFQIVNNSVRLLRFELTPQHGCVAPESKLQILVSPNSSLSTKQSMFPWSGLIYIHCDDG............................................................................................................................. 87
9 -4.370tr|E9PF99|E9PF99_HUMAN Uncharacterized protein OS=Homo sapiens GN=CEP192 PE=4 SV=1  ali   7  1...................................................................LPEHLILVAPSPCDMAKTGRFQIVNNSVRLLRFELTPQHGCVAPESKLQILVSPNSSLSTKQSMFPWSGLIYIHCDDG............................................................................................................................. 87
10 -4.340sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protein 13D OS=Homo sapiens GN=VPS13D PE=1 SV=1  ali   10  20................................................SARKVITVRSALIVRNRLETPMELRLDSPSAPDKPVVLPAIMPGPLHLTWRLQARPKGLGVFFCKA............................................................................................................................................................ 91
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.