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Query: [S] COG5572 Predicted integral membrane protein, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRGHDGYIVSSSPETGGLRGGEILFADHCNLGHPRNELSHDRAAQGRLGANPPGESLMTRTATTAALAAAIALSAGVSIAAADEHKAGAQTEKCYGVSKAGENDCKAGAGTSCAGTSKVDYQGDAWKMVKKGTCVTIKTPKGMGSLTPKALast
1 -6.720sp|Q5JRV8|FA70A_HUMAN Protein FAM70A OS=Homo sapiens GN=FAM70A PE=2 SV=1  ali   13  12.......................LYANRCHYVPKTSQKEAEEVISSSTKNSPSTRVMRNLTQAAREVNCP-----------------HLSREFC---PRIRGNTCFCCDLYNCGNRV--EITGGYYEYIDVSSCQDI............. 104
2 -6.340sp|Q5VU97|CAHD1_HUMAN VWFA and cache domain-containing protein 1 OS=Homo sapiens GN=CACHD1 PE=1 SV=2  ali   13  13......HITHKEPLVA-LNHPNFVKKNLCNSFSDRTVYKFNTSLAGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETCDSLAFCACSMVDRLCLNCHRMEQNEC------EC..................................... 118
3 -5.700sp|Q9NY47|CA2D2_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Homo sapiens GN=CACNA2D2 PE=1 SV=1  ali   16  16LIDDGGFLVLSNDQVGSEVDANLMSYDYCAPQPPGNLGAAPRGVFVPTVADFLNLAWWTSAAFQQLLYGLIYHSWFQADPAEAEGSPETRESSCYYFGSVNASYNAIIDCGNCSRLFHAQRLTNTFVVAEKPLC................ 186
4 -5.550tr|F8W9Z4|F8W9Z4_HUMAN Uncharacterized protein OS=Homo sapiens GN=AMBRA1 PE=4 SV=1  ali   17  1...YSGAILA-----------------HCKLRLPGSCHSPASASQVAGTTGAHHHARLIFAFLVEMEFHHVSQAGLELLTSGDLPTSASQSAGITGVS.................................................... 78
5 -5.260tr|B5MEH5|B5MEH5_HUMAN Uncharacterized protein OS=Homo sapiens GN=IZUMO2 PE=4 SV=1  ali   40  183LRGH-GLYIQTKPKTGGKEKGK................................................................................................................................ 214
6 -5.200sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2  ali   15  56...YPPYLIRGYPDTAALENRQTIINDYITSQQMHH.................................................................................................................. 88
7 -5.190sp|Q96F81|DISP1_HUMAN Protein dispatched homolog 1 OS=Homo sapiens GN=DISP1 PE=2 SV=3  ali   15  15.....SRVVFTSSGGETLWNLPAIKS--CNVDN---SRIRSHPQFGDLCQRTTAASCCPSWTLGNYIAILNNRSSCQKIVERDVSHTLKLLRTCAKHYQNGT-------GPDCWDMAARRKDQLKCTNVPR-KCTK.............. 134
8 -4.970sp|A7MBM2|DISP2_HUMAN Protein dispatched homolog 2 OS=Homo sapiens GN=DISP2 PE=2 SV=2  ali   14  1.RRQENFLVFMSTSSGSLWNLHAIHS--CRMEQ---DQIRSHTSFGALCQRTAANQCCPSWSLGNYLAVLSNRSSCLDTTQADAARTLALLRTCALYYHSGAPSCLGPGQNKSPRCAQVPTKCSQSSAI..................... 137
9 -4.950sp|Q6ZQQ6|WDR87_HUMAN WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=2 SV=3  ali   34  33....DCYIPNSVIRARLWPEGTPIYL-QCNLHAPQRELEWDRS........................................................................................................... 70
10 -4.930sp|Q9UHE8|STEA1_HUMAN Metalloreductase STEAP1 OS=Homo sapiens GN=STEAP1 PE=1 SV=1  ali   27  24...EDDYLHKDTGETSMLKRPVLLHLHHADEFDCPSELQH.............................................................................................................. 63
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.