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Query: [R] KOG2945 Predicted RNA-binding protein, from VFDB

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQLAEKHIVALMFPAIDVSTFTFVSGVKFYIMDNSGNNRYELLFMDDDDSSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKSEKENKPVVAARKANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQGRFNNNQRYGNKEGPPRVRTGEKFGKREFDRQSGSDRTGVKSIDKREGGGAHNWGSPKQDIEDLKTTGETSPQAEKEDSANEQSADPAVAAEEDESKQMTLDEWKALRDQRAKPNYNLRKAGEGAADNAEWKKMIVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKVGFRKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRNEGPRGEGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPLKVDDEAQFPTLCLast
1 -8.490sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4  ali   17  11MEVSEPHILETLKPATKTAELSVVSTSVEQSVAVMPEPSMTKILDS......................................................................................................................................................................................................................................................................................................................................................................................... 61
2 -5.730tr|E7ES18|E7ES18_HUMAN Uncharacterized protein OS=Homo sapiens GN=PKD1 PE=4 SV=1  ali   11  32.LRRPPAHQVMVFPGLRLSREAFLTTAGTQELRRPAQLRLQVY............................................................................................................................................................................................................................................................................................................................................................................................ 75
3 -5.500sp|Q8N2R0|OSR2_HUMAN Protein odd-skipped-related 2 OS=Homo sapiens GN=OSR2 PE=2 SV=2  ali   15  1..MGSKALPA-LHPSLQLTNYSFLQAVLQGLYGLSAVQTMHM............................................................................................................................................................................................................................................................................................................................................................................................. 51
4 -5.440sp|Q9HCJ5|ZSWM6_HUMAN Zinc finger SWIM domain-containing protein 6 OS=Homo sapiens GN=ZSWIM6 PE=2 SV=2  ali   7  73.....AHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYTVHHTEVLPTAQKLADEILSQNS.................................................................................................................................................................................................................................................................................................................................................................. 138
5 -5.420tr|D6RG03|D6RG03_HUMAN Uncharacterized protein OS=Homo sapiens GN=SRD5A1 PE=4 SV=1  ali   7  88LAMFLVHYGFWLVVNGPFRSYPKESQKTRRYWIQNTKGRL............................................................................................................................................................................................................................................................................................................................................................................................... 134
6 -5.340sp|Q14432|PDE3A_HUMAN cGMP-inhibited 3`,5`-cyclic phosphodiesterase A OS=Homo sapiens GN=PDE3A PE=1 SV=3  ali   18  36..MGEAHITDLLLPPNVCTSLRAVSNLLSTQLTFQAIHK................................................................................................................................................................................................................................................................................................................................................................................................ 78
7 -5.300sp|Q9Y2G1|MRF_HUMAN Myelin gene regulatory factor OS=Homo sapiens GN=MRF PE=1 SV=3  ali   13  3..ISQRFLQGTIIALVVVMAFSVVS--MSTLYVLSLRTEEDLVDTDGSFAVSTSCLLALLRPQPPGGSEA................................................................................................................................................................................................................................................................................................................................................................. 68
8 -5.270sp|Q8NI27|THOC2_HUMAN THO complex subunit 2 OS=Homo sapiens GN=THOC2 PE=1 SV=2  ali   5  57.......TDQVLLPSLSLMDCN--ACMSEELWGMFYQHRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQ................................................................................................................................................................................................................................................................................................................................................. 137
9 -5.260sp|Q8TAX0|OSR1_HUMAN Protein odd-skipped-related 1 OS=Homo sapiens GN=OSR1 PE=2 SV=1  ali   17  1..MGSKTLPA-IHPSLQLTNYSFLQAVLPNLYGFSALHAVHL............................................................................................................................................................................................................................................................................................................................................................................................. 52
10 -5.230sp|Q8IVF2|AHNK2_HUMAN Protein AHNAK2 OS=Homo sapiens GN=AHNAK2 PE=1 SV=2  ali   21  13.QLWEDSVLTVKFPKLMVPRFSFPAPSSEDDVFIPTVRE................................................................................................................................................................................................................................................................................................................................................................................................ 50
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.